Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1696 192 7e-44 >seq1696 Length=952724 Score = 192 bits (212), Expect = 7e-44 Identities = 651/1001 (65%), Gaps = 19/1001 (2%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| ||| || ||||| || || |||||||||||||| || ||| | | || Sbjct 104966 GACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGAGGGTGGAGAATAATGAA 105025 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGA 104817 | ||||| || | ||||| | | | || || || ||| ||| | ||| ||||| Sbjct 105026 GACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGAGTGCTG-GGGGGAGGA 105084 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGTGCCAG 104876 |||||| | || ||||| | |||||| | || || ||| | ||| |||| | Sbjct 105085 GTTTGAGGAGCTCTACACCAGATACGAGAAGGAGGGGAGGGTCA-AGCGTGTGGTGAAGG 105143 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | ||||| | || || | |||| || || || ||||| || || ||||||| Sbjct 105144 CTCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAGAAACTGGGACGCCGTACATGC 105203 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | |||||||| ||||| ||| ||||| || || ||||| |||| |||||| | Sbjct 105204 TGTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGGACCATCAAGTGCA 105263 Query 104997 CCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 105056 ||| ||||| ||||||||| | |||| || ||| || ||| |||||| || || | Sbjct 105264 GCAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGGACGAGGTGGCTGTCTGCAATC 105323 Query 105057 TCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAA 105116 | || || ||||||||| || ||| || || ||| ||| | ||| | | ||| Sbjct 105324 TGGCCTCCATCGCTCTCAACATGTACGTCACACCTGAG---CGGACTTATGACTTTAAAA 105380 Query 105117 AACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 |||| || || || || ||| || |||| |||||| |||| || | || Sbjct 105381 AACTGGCATCTGTGACCAAAGTAATTGT---CAGAAACTTAAACAAGATTATCGACATAA 105437 Query 105174 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | | ||||| || || || | ||||||||| | ||| | ||||| || | | Sbjct 105438 ACTACTACCCAGTGGAAGAGGCCAAGAGGTCTAATATGCGCCACAGGCCAATAGGAATTG 105497 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 105293 | || || || | || || | || || || || | ||||||| | || | Sbjct 105498 GAGTCCAAGGATTGGCTGACGCCTTTATCCTGATGCGTTATCCATTTGAAAGCCCTGAGG 105557 Query 105294 CGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTT 105353 | || |||| | || ||||||||||| || |||| ||||| |||||||||| Sbjct 105558 CTCAGCTGCTCAACATCCAAATCTTTGAGACCATTTACTACGCTGCTCTGGAGGCGAGTT 105617 Query 105354 CAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAA 105412 ||||| || | | | || || || || || | || ||||| || | ||| || Sbjct 105618 GTGAGTTAGCCGCCGAACACGGCCCCTACGAGACGTACGAAGGTTCCCCGG--TCAGTAA 105675 Query 105413 GGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAG 105470 ||| ||| || | || |||| ||||| || |||| | | | |||||| | | Sbjct 105676 GGGCATCTTCCAGTACGACATGT-GGAAGAAGACGCCAACGGACCTGTGGGACTGGAAGG 105734 Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530 | || ||||| || | | || | | ||||| || || |||||||||||| Sbjct 105735 CGCTGAAGGAGAAGGTCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCTCCAATGC 105794 Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590 |||| ||||||||||| || ||| |||| || || || | | | || ||||||| | | Sbjct 105795 CAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCA 105854 Query 105591 ACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGG 105650 ||||||| | || || | ||||||||| ||| |||||| || || | Sbjct 105855 ACATCTACACCCGCAGGGTGCTGTCAGGAGAGTTTCAGATCGTCAACCCTCACCTGCTCA 105914 Query 105651 ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | ||||| | |||| || || ||| | |||| |||||| Sbjct 105915 AAGACCTGACGGAGAGGGGACTGTGGAGCGAGGACATGAAG 105955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583212411225880