Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1696 309 3e-79 seq913 102 9e-17 seq1698 87.8 2e-12 >seq1696 Length=952724 Score = 309 bits (342), Expect = 3e-79 Identities = 577/841 (69%), Gaps = 18/841 (2%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || ||||| ||||| || ||| ||||||| ||| | |||| |||||||||||| Sbjct 105330 GAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAG 105271 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || |||||||||| || | |||| ||||||||||||| ||| ||||| || Sbjct 105270 AGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCT 105211 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| ||||||||||||||| || || ||| || | | | ||| ||| | Sbjct 105210 TTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGC 105151 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCG 79296 | | | ||| || || |||| || |||| |||| | ||| | ||| Sbjct 105150 TGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCC 105091 Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 | || ||||||| || ||| ||| || ||||| ||| ||| ||||||||| | Sbjct 105090 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 105031 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 ||||| || | ||||| ||| ||| |||||||||||| |||||||||||||| ||| Sbjct 105030 CAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAA 104971 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 ||||| | ||| ||| || | ||| |||| |||||| || ||||| | Sbjct 104970 AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 104911 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || ||||| |||||||| || |||||||| | || | ||| ||| ||| Sbjct 104910 ACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCCCC 104851 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 |||| |||||| || || ||||||||| | || | |||||||| |||| || | || | Sbjct 104850 TGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAG 104791 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GA-GCAGTGGATT- 79653 |||||| || || ||| ||| |||| || || || || |||| || Sbjct 104790 CAGCCGTTGGTGCCAGCGAT----GTA--GCTC--CCTGTTGATCTGATGCAGCTGACCG 104739 Query 79654 -----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 ||||| || |||| | | ||||||||| | ||||| | ||| || || ||||||| Sbjct 104738 CTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGA 104679 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||||||||| |||||||||||| || | |||||||||||| |||| |||||| ||| Sbjct 104678 TGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGT 104619 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 | || || || ||||||||||| || | ||||| ||||| |||| | || ||| | Sbjct 104618 TGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGT 104559 Query 79829 CGTACGTCTCCTTGAC-GCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 79887 ||| ||||| || | ||| | |||| |||||||| || || || || | |||| Sbjct 104558 TGTAGGTCTCGATGGCTGCGTCGATATCCGTC-CCGTGGATTCCCACGGCCACTCTCATG 104500 Query 79888 A 79888 | Sbjct 104499 A 104499 Score = 264 bits (292), Expect = 1e-65 Identities = 929/1432 (65%), Gaps = 51/1432 (4%) Strand=Plus/Plus Query 19069 CCTGCAGAAGGGCTACCTCAACGAGGGTGAGACGCCTCAGTACCTTTTCATGCGAGTCGC 19128 ||||| |||| || ||| | || |||| ||| || || | ||||| |||| || Sbjct 104452 CCTGCTGAAGATTGACAGCAAGGTGGCTGAGCGGCCGCAACACATGCTCATGAGAGTGGC 104511 Query 19129 GGTCGGCATCCATGGCGACG-ACCTCC-CGCGAGTCCGCGAGACATACGACCTGATGAGC 19186 || || ||||| || |||| | || ||| || | |||||| ||| ||||| || Sbjct 104512 CGTGGGAATCCACGG-GACGGATATCGACGC-AGCCATCGAGACCTACAACCTGCTGTCG 104569 Query 19187 CAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAG 19246 |||||| ||||| ||||| | || ||||| ||||| || || || |||| || ||| Sbjct 104570 GAGAAGTGGTTCACCCACGCCTCTCCAACCCTCTTCAATGCTGGAACCAACAGGCCACAG 104629 Query 19247 ATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACG 19306 |||| ||||| ||||| | || |||||||| |||||||| |||||||||||||| || Sbjct 104630 CTGTCTAGCTGCTTCCTGCTTGCAATGAAGGACGACAGCATCGAGGGCATCTACGACACA 104689 Query 19307 CTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG------GATCCACTGC 19360 || ||| | ||||| | ||||||||| | | |||| || ||||| | || |||| Sbjct 104690 CTGAAGCAATGCGCCCTCATCTCCAAATCGGCCGGCGGAATCGGYGTAGCGGTCAGCTGC 104749 Query 19361 TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATC 19420 ||| | || | || | ||| ||| || ||||| || | || || Sbjct 104750 ------ATCAGATCAACAGGGAGCTACATCGCTGGCACCAACGGCTGCTCCAATGGGCTC 104803 Query 19421 GTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAA 19480 ||||| ||||| | |||| ||||||||| || | |||||| ||||||||||| |||| Sbjct 104804 GTCCCCATGCTGAGGGTCTACAACAACACTGCACGTTACGTCGACCAGGGGGGCAACAAA 104863 Query 19481 CGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTC 19540 | || | |||||||| ||||| ||||| ||||| || || | || ||||| Sbjct 104864 AGACCCGGAGCCTTCGCCATGTACCTGGAGCCCTGGCATTTTGATGTGTTTGACTTCCTG 104923 Query 19541 GAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTG 19600 || ||| |||| ||| | || ||| ||| | ||||| ||| ||| || Sbjct 104924 GAGCTGAAGAAGAACACGGGAAAGGAAGAGCAGCGAGCGAGGGACCTTTTCTACGCCCTG 104983 Query 19601 TGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGC 19660 ||||| || ||||| |||||| ||| ||| ||||| | ||||| ||| ||||||||| Sbjct 104984 TGGATCCCTGACCTCTTCATGAAGAGGGTGGAGAATAATGAAGACTGGTCCCTGATGTGT 105043 Query 19661 CCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGG 19720 ||| ||| ||||| || || ||| || || |||| ||| | ||| | ||| Sbjct 105044 CCGGCCGACTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGGAGCTCTACACC 105103 Query 19721 ACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGC 19780 | |||| |||| || ||||| ||||| ||| | | | | ||| || | Sbjct 105104 AGATACGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGCTGTGGTACGCC 105163 Query 19781 GTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAAC 19840 || | | ||| || || || || ||||||||| ||||| || ||| ||| Sbjct 105164 ATCATTGAGTCACAGACAGAAACTGGGACGCCGTACATGCTGTACAAAGAYGCCTGCAAC 105223 Query 19841 GCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 ||| || ||| |||| | || | ||||||| |||||| || || |||||| Sbjct 105224 AGGAAGAGCAACCAGCAGAATCTGGGGACCATCAAGTGCAGCAACCTCTGCACAGAAATC 105283 Query 19901 ATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 | || ||| ||||||| || || || |||||||| ||| | || Sbjct 105284 GTCGAATACACCAGCAAGGACGAGGTGGCTGTCTGCAATCTGGCCTCCATCGCTCTCAAC 105343 Query 19961 ACTTTCGTCAAGGCCT---CCTCCTT-CGACTTTGCCAAATTGTACGAGGTGACCCGGG- 20015 | | |||| | ||| | ||| |||||| ||| || |||||| | Sbjct 105344 ATGTACGTC-ACACCTGAGCGGACTTATGACTTTAAAAAACTGGCATCTGTGACCAAAGT 105402 Query 20016 --TCGTCACGCGTAATCTGAATCGCG-TCATCGATCGGAACTTTTACCCGACCGAGGCGG 20072 | |||| || || || | | | ||||| |||| ||||| || | || Sbjct 105403 AATTGTCA----GAAACTTAAACAAGATTATCGACATAAACTACTACCCAGTGGAAGAGG 105458 Query 20073 CGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACG 20132 | | ||| |||||||||||| |||| || | || || ||||| || |||| |||| Sbjct 105459 CCAAGAGGTCTAATATGCGCCACAGGCCAATAGGAATTGGAGTCCAAGGATTGGCTGACG 105518 Query 20133 ---TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGG 20189 || || ||||| || || |||| || || |||| | |||||||| Sbjct 105519 CCTTTATCCTGATG--CGTTATC-CATTTGAAAGCCCTGAGGCTCAGCTGCTCAACATCC 105575 Query 20190 GCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCCAAAG 20246 ||||| ||| || | ||| |||| || ||||| || || || | ||| | Sbjct 105576 AAATCTTTGAGACCATTTACTACGCTGC---TCTGGAGGCGAGTTGTGAGTTAGCCGCCG 105632 Query 20247 AGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG--AGGGTATCCTCCAGCC 20304 | ||||||| |||||||||| | | || || |||| ||| | |||| ||| ||||| Sbjct 105633 AACACGGCCCCTACGAGACGTACGAAGGTTC-CCCG-GTCAGTAAGGGCATCTTCCAGTA 105690 Query 20305 GGACATGTGG-----GGCGTC-ACTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGAT 20358 ||||||||| | || | || || | |||| || || |||| || | Sbjct 105691 CGACATGTGGAAGAAGACGCCAACGGACCTGTGGGACTGGAAGGCGCTGAAGGAGAAGGT 105750 Query 20359 CAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGC 20418 | | ||||| | | ||| |||| | || || ||||| || ||||| ||||| Sbjct 105751 CGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCTCCAATGCCAACGGCCTCCACCGC 105810 Query 20419 CCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 ||||||| |||| ||||||||| | ||||| | ||||| | |||||||||| Sbjct 105811 CCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTAC 105862 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| || | ||| || ||| |||||||||| | ||||| | ||||| | |||| Sbjct 105888 AACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCG 105829 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || Sbjct 105828 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAG 105776 >seq913 Length=88738 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| || |||||| || ||||||||||||||||| || || || |||||||| Sbjct 60854 GCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 60913 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||||||||||| |||||||||||||| || | | |||||| Sbjct 60914 AAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 60973 Query 60111 G 60111 | Sbjct 60974 G 60974 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| || |||||| || ||||||||||||||||| || || || |||||||| Sbjct 73585 GCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 73526 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||||||||||| |||||||||||||| || | | |||||| Sbjct 73525 AAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 73466 Query 60111 G 60111 | Sbjct 73465 G 73465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 62360 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 62419 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||||||||| || || || Sbjct 62420 AACTTCTTCGAGAAGCGGGTGGGCGAGTA 62448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 72079 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 72020 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||||||||| || || || Sbjct 72019 AACTTCTTCGAGAAGCGGGTGGGCGAGTA 71991 >seq1698 Length=2458952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| || || ||||||||||| || || |||||| | |||| | Sbjct 826367 GCTTTTGCAGCTGTGGAGGGCATTTTCTTCTCTGGTTCATTTGCTGCTATCTACTGGTTA 826426 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||| || || | | |||||||||||| ||| | |||||||| Sbjct 826427 AAGAAGAGGGGCCTAATGCCTGGACTTACCTACTCCAACGAGCTCATTAGCAGGGACGAG 826486 Query 60111 G 60111 | Sbjct 826487 G 826487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548479293011280