Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1696 223 4e-53 seq244 87.8 2e-12 seq1677 86.0 7e-12 >seq1696 Length=952724 Score = 223 bits (246), Expect = 4e-53 Identities = 524/780 (67%), Gaps = 20/780 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT-GAGACGTAC 53251 ||||| | || ||| |||| |||||||| |||| || || || | ||||| ||| Sbjct 104499 TCATGAGAGTGGCCGTGGGAATCCACGG-GACGGATATCGACGCAGCCATCGAGACCTAC 104557 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | || | |||| || || |||||| | |||||||| ||||| ||||| || Sbjct 104558 AACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCAACCCTCTTCAATGCTGGAACC 104617 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || ||| |||| |||||||||||| | || |||||||| ||| ||||| ||| Sbjct 104618 AACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCAATGAAGGACGACAGCATCGAGGGC 104677 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TA 53429 |||||||| || || ||| | || |||| ||||||||| | | | || || ||||| || Sbjct 104678 ATCTACGACACACTGAAGCAATGCGCCCTCATCTCCAAATCGGCCGGCGGAATCGGYGTA 104737 Query 53430 TCCA-CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | | ||| | || | | | || | ||| || || |||||| | || Sbjct 104738 GCGGTCAGCTGCA---TCAGATCAACAGGGAGCTACATCGCTGGCACCAACGGCTGCTCC 104794 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 |||| |||| || ||||| | |||| ||||||||| || || |||||| ||||||| Sbjct 104795 AATGGGCTCGTCCCCATGCTGAGGGTCTACAACAACACTGCACGTTACGTCGACCAGGG- 104853 Query 53549 GGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 ||| | | ||| || | |||||||| ||||| ||||| ||||| || | Sbjct 104854 ---GGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCCTGGCATTTTGATGT 104910 Query 53605 TATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCT 53664 | || || || |||||| ||| ||| | |||||| ||| | ||||| Sbjct 104911 GTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAAGAGCAGCGAGCGAGGGACCT 104970 Query 53665 GTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 || ||| || |||||||| || |||||||||||| | | ||||||||| | || || | Sbjct 104971 TTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGAGGGTGGAGAATAATGAAGACT 105029 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 ||| ||||||||| ||| ||| |||||||| || | | ||| || || ||||||||| Sbjct 105030 GGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTT 105088 Query 53783 AACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 | ||| | || | |||| |||| | |||| ||| ||||| | Sbjct 105089 GAGGAGCTCTACACCAGATACGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAG 105148 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| | || ||| | || ||| || || || |||||||||||| ||| Sbjct 105149 CAGCTGTGGTACGCCATCATTGAGTCACAGACAGAAACTGGGACGCCGTACATGCTGTAC 105208 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || || | |||| ||||||||||||| |||| | || |||||| | |||||| Sbjct 105209 AAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGGACCATCAAGTGCAGCAAC 105268 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| ||||||||||| || || || || |||||| |||||||||||||| | Sbjct 105775 CCTGCTGCTGGCTCCAATGCCAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 105834 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| ||| || || |||| |||||| || Sbjct 105835 CATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTGTCAGGAGAGTTTCAGAT 105894 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| ||||| |||| |||||| Sbjct 105895 CGTCAACCCTCACCTGCTCAAAGACCTG 105922 >seq244 Length=6775444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT-G 152087 |||||||||||||| | |||||| | ||||||||||| ||||| |||||||||| | Sbjct 3964589 GTGAAGATGTATCGAGGGCTGGCGGAGTCCTTGCCACCGTGCAGCCTGGTTCCAAACTGG 3964530 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| | ||| || | ||||||| ||||| || ||||| |||||| Sbjct 3964529 CCCAGA-GGCTGCAAGAGATTCAAGTTGTTGCTTCCCACAAAGTTCTGGGCCAAA 3964476 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 117440 CTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC 117499 ||| |||| ||||||||||| || | | ||| ||||| |||| |||||||| |||||| Sbjct 3964076 CTCACCTCTCCATGGTGATAGGCTGACATCTCAGCCACTGAGCCTGCCAGCTGTGCCACC 3964017 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| ||| | | |||| |||||| || || | |||||| | ||||| ||| Sbjct 3964016 TTCACCTCTCGCTTGTCGTTCCTCTTGAAACAACAGTACAGCACCTTCCTCTGACCTGGT 3963957 Query 117560 TTCAGACC 117567 |||||||| Sbjct 3963956 TTCAGACC 3963949 >seq1677 Length=755600 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| ||||| || | || || |||||||| Sbjct 160508 GTGAAGATGTAACGAGGGCTGGCTGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 160449 Query 152089 CC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||||| || |||| ||| | |||||| |||||| || ||||||||||| ||||| Sbjct 160448 CCCAGAGG-CTGAAGGATGTTCACATTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTCAC 160390 Query 152148 AATCGT 152153 || || Sbjct 160389 TATGGT 160384 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || ||||| ||||| ||| | || ||||| || || Sbjct 160508 GTGAAGATGTAACGAGGGCTGGCTGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 160449 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| | || ||||| |||||| |||||||||||| ||||||||||| || Sbjct 160448 CCCAGAGGCTGAAGGATGTTCACATTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTCACT 160389 Query 117425 ATCGT 117429 || || Sbjct 160388 ATGGT 160384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547170601592600