Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1696 190 2e-43 seq33 179 4e-40 seq1605 163 3e-35 >seq1696 Length=952724 Score = 190 bits (210), Expect = 2e-43 Identities = 800/1238 (65%), Gaps = 50/1238 (4%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 ||||||||||| ||| |||||||||| | ||| ||| || || || |||||||||| Sbjct 105700 CCACATGTCGTACTGGAAGATGCCCTTACTGAC--CGGGGAACCTTCGTACGTCTCGTAG 105643 Query 80599 GGGCCCTC--CGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAATGC 80653 ||||| | || | ||| | |||||| || ||||| | || |||| |||||| Sbjct 105642 GGGCCGTGTTCGGC--GGCTAACTCACAACTCGCCTCCAGA---GCAGCGTAGTAAATGG 105588 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATC 80712 |||||||| |||| | | || | |||| ||| || || | | | |||| Sbjct 105587 TCTCAAAGATTTGGATGTTGAG-CAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATC 105529 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | || || ||||||||| || || || || || | || || | ||||||| | || Sbjct 105528 AGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTA 105469 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || | || |||||| | |||||| |||| | ||||| | ||| | ||| | Sbjct 105468 GACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTG 105409 Query 80833 GTAACAACCCGTGTAACATCATGA-AGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAA 80891 || || || ||| ||| ||||| | |||||| || || | | ||| Sbjct 105408 ACAATTACTTTGGTCACAG-ATGCCAGTTTTTTAAAGTC--ATAAGTCCGC--TCAGGTG 105354 Query 80892 TGCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTCA--GCATC 80942 || || | | | | || ||| ||||||||||| || |||||||| || || Sbjct 105353 TGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGG 105294 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| ||||||||||| ||||| | || |||| || || ||||| || | ||| Sbjct 105293 TGTAT--TCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTG 105236 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||| || || ||||| ||||||||| || || || || ||| Sbjct 105235 GTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTG 105176 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCC 81119 ||||| | |||||||| ||| | || | ||||| ||||| ||| || | || Sbjct 105175 TGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTT---GACCCTCCC 105119 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 || | | || ||| ||| ||| || || |||| | || || || Sbjct 105118 CTCCTTCTCGTATCTGGTGTAGAGC-TCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCC 105060 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | ||||| ||| || ||||||||| |||||| | ||||| || |||||||| Sbjct 105059 CGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGA 105000 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | |||||||||||| |||||| ||| ||||| | ||| ||| || | ||| Sbjct 104999 AGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCG 104940 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 ||| || ||| || ||||| | | || |||||| |||||||| |||| || Sbjct 104939 TGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGG 104880 Query 81359 CGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 ||| | || ||| | ||| ||||||| ||||||||| ||||| ||| | Sbjct 104879 CGAAGGCTCCGGGTCTTTTG-TTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAG 104821 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || | || ||| |||| || |||| || ||||| || || |||| ||| Sbjct 104820 ACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCT 104761 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | | | | ||||| | | ||||| || || | | | || || || | || Sbjct 104760 GTTGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCG 104701 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 || | |||| || || || || ||||||||||| || | ||||| |||||| ||| Sbjct 104700 CATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAG 104641 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 ||||| |||| ||| || || || | || |||||||| || ||||| | ||||| || Sbjct 104640 CAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTG 104581 Query 81655 AAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATAT-CGTCACCGT 81712 || | | |||| ||||| ||||| || || | |||| | |||| |||| |||| Sbjct 104580 AACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCG-ATATCCGTC-CCGT 104523 Query 81713 GAATACCGATAGCTACACGCATAAACATGTACTGGGGC 81750 | || || | || || | ||| | ||||| || ||| Sbjct 104522 GGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGC 104485 >seq33 Length=2144867 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||||||| | | Sbjct 1190284 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| ||||| |||||||||||||| ||||| || |||||| Sbjct 1190344 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 1190403 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 1190404 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190463 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 1190464 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGGTGG 1190510 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||||||| | |||| | ||||| ||| |||||||||| || ||||| |||||||| Sbjct 1213678 GAGGTTGAGCCCAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAGGAGGGC 1213737 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||||||| | || || |||||||||||||| || || |||| || ||| Sbjct 1213738 ATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACC 1213797 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| ||||| || || || ||| ||||||| | || Sbjct 1213798 CTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGAGGC 1213857 Query 27631 GGACAA 27636 || ||| Sbjct 1213858 GGTCAA 1213863 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||||||| | || Sbjct 1213481 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1213540 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || | ||||| ||| |||||||||| || ||||| |||||||| || Sbjct 1213541 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAGGAGGGCAT 1213587 >seq1605 Length=404251 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || || || ||| | || Sbjct 108434 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 108375 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || |||||||| ||||| || ||||| |||||| Sbjct 108374 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 108315 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 108314 CAGAGGCTCATCTTCGCAGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 108255 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || || || || |||| || || || ||| Sbjct 108254 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGTGGAGGA 108207 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||| ||| | || Sbjct 108871 ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 108812 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || ||||| ||||| || || ||||| |||||| Sbjct 108811 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 108752 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||| | || || |||||||| || Sbjct 108751 CAGAGGCTCATCTTTGCTGGCAA 108729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263085623440