Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq905 125 6e-24 seq101 107 2e-18 >seq905 Length=872545 Score = 125 bits (138), Expect = 6e-24 Identities = 133/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||||||| || || |||||||||||||| || || | ||||| || || Sbjct 153185 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATATATAGGTCCTAGATC 153244 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || || | ||| || |||||||| ||||||| ||||| ||||| || Sbjct 153245 ACCCTCCTCTCTATCAGTGAACCCAAGATTGTCCAAGAAGTCTCGAGAACCATTGGCATC 153304 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30396 ||| ||||| || || ||| | || ||||| ||||| ||||| || || ||||| Sbjct 153305 CCAAATCTTCACGCCTTTCGCTGAAAGCTCCTTGGAATTTGTTGATCC-CTGAC 153357 Score = 116 bits (128), Expect = 3e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| || || || || ||||||||||| || || || Sbjct 152683 AGTCCTGTAATGTGTGCGATCATGTAGGTAAGAAGTGAATAGCTGGCGATATTGAAAGGC 152742 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || ||||| || || || | |||||| ||||||||||| ||||| || || | Sbjct 152743 ACCCCCAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCACCATCACAY 152802 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || ||||| || | |||||||| || || || ||||| Sbjct 152803 ACATAGAACTGGCAGAGTGCGTGGCAGGGTGGCAGCGCCAT 152843 >seq101 Length=272765 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 110405 GCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGG 110464 |||||||||||||||| | ||| || |||| | |||||||| ||||| || ||||||| Sbjct 61673 GCTCCCTGCTGAGGACAATGTTGATTCTGTTGTTTAGAGGTCTGTTCTTCTCTGGGATGG 61732 Query 110465 AGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 | |||| ||||| || ||||| |||||||| |||||||||||| Sbjct 61733 AATACCACGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 61776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406277534186604