Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq905 105 6e-18 >seq905 Length=872545 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || | || || || || ||||| |||||||| | ||| Sbjct 152695 TGTGCGATCATGTAGGTAAGAAGTGAATAGCTGGCGATATTGAAAGGCACCCCCAGGCCC 152754 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || || || || || || ||||| || |||||||| |||| || ||||| ||| Sbjct 152755 ATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCACCATCACAYACATAGAACTGG 152814 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | |||||| || || ||||||||| ||| || || Sbjct 152815 CAGAGTGCGTGGCAGGGTGGCAGCGCCATCCTAGGAAGGTC 152855 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||| ||||||||| || || |||||| | |||||||| ||||| || || Sbjct 152855 GACCTTCCTAGGATGGCGCTGCCACCCTGCCACGCACTCTGCCAGTTCTATGTRTGTGAT 152796 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || || || || ||||| | |||||||| ||| Sbjct 152795 GGTGAGCTGTCGTGTCAGCTGTACCAGCGCTCAGGTGATATGGGCCTGGGGGTGCCTTTC 152736 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || | || || || ||||||||||| || Sbjct 152735 AATATCGCCAGCTATTCACTTCTTACCTACATGATCGCACA 152695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| || || | || || | || |||||||| Sbjct 153195 TACTCTGCACCAAAGTGCCTCCACTGGAAACCATATATAGGTCCTAGATCACCCTCCTCT 153254 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | |||||| | ||||||| ||||||||||| || | || ||||| |||||| Sbjct 153255 CTATCAGTGAACCCAAGATTGTCCAAGAAGTCTCGAGAACCATTGGCATCCCAAATCTTC 153314 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | || |||||||||| Sbjct 153315 ACGCCTTTCGCTGAAAGCTCCTTGG 153339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||||||||| || | || |||||||| ||||| || | || ||||||||||| Sbjct 153339 CCAAGGAGCTTTCAGCGAAAGGCGTGAAGATTTGGGATGCCAATGGTTCTCGAGACTTCT 153280 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | |||||| | | | |||||||| || | || || | || || |||| Sbjct 153279 TGGACAATCTTGGGTTCACTGATAGAGAGGAGGGTGATCTAGGACCTATATATGGTTTCC 153220 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || ||||| Sbjct 153219 AGTGGAGGCACTTTGGTGCAGAGTA 153195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448225211030640