Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq33 178 3e-39 seq1605 167 5e-36 seq146 95.1 3e-14 seq173 86.0 1e-11 >seq33 Length=2144867 Score = 178 bits (196), Expect = 3e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1190951 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 1190892 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||| || |||| || ||||| ||| Sbjct 1190891 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 1190832 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || ||||||||| | |||||||| || ||||| ||| Sbjct 1190831 TGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 1190772 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | |||||| Sbjct 1190771 TTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1190495 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 1190436 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||||||| Sbjct 1190435 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 1190376 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| || ||||| | |||||||| || ||||| ||| Sbjct 1190375 TGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 1190316 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 1190315 TTGCCAGTGAGGGTCTTGACAAAGATCTGCATCTT 1190281 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1190723 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 1190664 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| ||||||| ||||| |||||| Sbjct 1190663 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCC 1190604 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| || ||||| | |||||||| || ||||| ||| Sbjct 1190603 TGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 1190544 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 1190543 TTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | || || | |||||| Sbjct 1213464 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 1213405 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || |||||||| |||| ||||| |||||| Sbjct 1213404 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCC 1213345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || |||||||| | |||||||| || ||||| ||| Sbjct 1213344 TGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 1213285 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 1213284 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 1213250 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 1213844 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 1213785 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 1213784 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 1213725 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| ||||| || || ||||||||| | |||||||| Sbjct 1213724 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTC 1213678 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||| || || ||||||||| | |||||||| Sbjct 1213584 CCCTCCTTATCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCC 1213525 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 1213524 AGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1213481 >seq1605 Length=404251 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| || |||||||| || |||||||| || || | || Sbjct 108210 TCCACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAG 108269 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| ||||||||||| || | || ||||||||||| | Sbjct 108270 GGTGCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGAT 108329 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || |||||||||||||| ||||| || || ||||||||| | || || || Sbjct 108330 GCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTC 108389 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 108390 CAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 108434 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || | || ||||||||||| | |||||||| ||||||||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || ||||||||| | || ||||| || ||||| ||||| || || Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 211092 AGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| ||||| | |||||| ||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCATCTTA 108875 >seq146 Length=2199602 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| |||| ||| ||| ||||| |||||| Sbjct 415559 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGACTGAGAATGGAGAAGAGACACAAC 415500 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| ||| | ||| |||| |||| | Sbjct 415499 TATGTGAGAAAAGTAGCTGAGACAGCTGTCCAGCTCTTTGTGTCCAATGACA--AAGT-T 415443 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 || | || || || ||||| || || || || |||||||| | ||| | ||| Sbjct 415442 AACGTGGCAGGAATGGTCTTGGCTGGCTCTGCTGATTTCAAGACTGAACTCAGCCAGTCT 415383 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 415382 GACATGTTTGATCC 415369 >seq173 Length=537686 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| || || ||||| || |||||| | ||||| || Sbjct 457463 CCTTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTGGGCTCAACTTCA 457522 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| || |||||||| || | |||||| || Sbjct 457523 AGGGTGATGGTTTTCCCCGTCAGCGTCTTTACGAAGATCTGCATGTT 457569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159053429698505