Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3272 145 2e-29 seq1605 136 9e-27 seq33 131 4e-25 seq4078 102 2e-16 >seq3272 Length=4133 Score = 145 bits (160), Expect = 2e-29 Identities = 207/288 (72%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGAT 7499 ||| ||||||||||||||| | ||||| || ||||| || |||| |||||| | | Sbjct 184 ACGCTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACTGCTTTTTCTGTATT 242 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||||||| || || ||| |||| || | || ||||| ||| | || Sbjct 243 GATTAGATTAGAATTAAGTGGACCTGGTGTTCAA---TTTATTGCTAATAATCAATTATA 299 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| ||||| || ||||| | | |||||||| || | |||||||| | | | Sbjct 300 TAACAGTATAATTACAGCTCATGCTATATTAATGATTTTTTTCATGGTTATGCCTGCTTT 359 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| || || || || | || | ||||||||| | || | |||||||||||| || Sbjct 360 AATAGGAGGATTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGTCCTGATATGGCATT 419 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || | || ||||| |||||||||||| |||| ||| ||||| Sbjct 420 CCCTAGATTAAATAATATTAGTTTTTGATTATTACCACCTAGTTTATT 467 >seq1605 Length=404251 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| |||| || || Sbjct 108213 ACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 108272 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| || | || ||||| || || || || Sbjct 108273 GCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 108332 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||||| ||||||| || |||||||| || ||||| || | Sbjct 108333 CTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAG 108392 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||||||| Sbjct 108393 GGTGATGGTCTTGCCCGTCA 108412 >seq33 Length=2144867 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| || | || ||| | |||||| Sbjct 1213464 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 1213405 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 1213404 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCC 1213345 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| || |||||||| || || || || | ||||| ||| Sbjct 1213344 TGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 1213285 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | ||| | ||||| || Sbjct 1213284 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 1213250 Score = 129 bits (142), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 1190952 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 1190893 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || |||||||| ||||| || ||||| || Sbjct 1190892 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC 1190833 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||| || |||||||| || || || || | ||||| || Sbjct 1190832 CTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 1190773 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||||| | || | ||||| Sbjct 1190772 CTTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 1190724 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 1190665 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || |||||||| ||||| ||||| ||||| Sbjct 1190664 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTC 1190605 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| ||| || ||||| || || || || | ||||| || Sbjct 1190604 CTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 1190545 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| || | ||||| Sbjct 1190544 CTTGCCAGTGAGGGTTTT 1190527 >seq4078 Length=1807 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| ||||| ||||| || ||||||||||||| |||||||||| Sbjct 561 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 620 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 621 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 680 Query 7844 AATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 681 CAACTTAATGCGTTAGCT 698 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 1262 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 1204 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 1203 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192429791246078