Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq905 116 3e-21 seq101 98.7 8e-16 >seq905 Length=872545 Score = 116 bits (128), Expect = 3e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| || || || || ||||||||||| || || ||| Sbjct 152683 AGTCCTGTAATGTGTGCGATCATGTAGGTAAGAAGTGAATAGCTGGCGATATTGAAAGGC 152742 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || ||||| || ||||| | |||||| ||||| ||||| ||||| || || | Sbjct 152743 ACCCCCAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCACCATCACAY 152802 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||||| || | || ||||| || || || ||||| Sbjct 152803 ACATAGAACTGGCAGAGTGCGTGGCAGGGTGGCAGCGCCAT 152843 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || || | ||||| || || ||||| || || | ||| Sbjct 153207 AAGTGCCTCCACTGGAAACCATATATAGGTCCTAGATCACCCTCCTCTCTATCAGTGAAC 153266 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||| ||||||| ||||| ||||| ||||| ||||| || || ||| | Sbjct 153267 CCAAGATTGTCCAAGAAGTCTCGAGAACCATTGGCATCCCAAATCTTCACGCCTTTCGCT 153326 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30168 || ||||| ||||| ||||| || || ||||| Sbjct 153327 GAAAGCTCCTTGGAATTTGTTGATCC-CTGAC 153357 >seq101 Length=272765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114288 GCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGG 114347 |||||||||||||||| | ||| | |||| | |||||||| ||||| || ||||||| Sbjct 61673 GCTCCCTGCTGAGGACAATGTTGATTCTGTTGTTTAGAGGTCTGTTCTTCTCTGGGATGG 61732 Query 114348 AGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 | |||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 61733 AATACCACGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 61776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406130346093382