Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2474 152 4e-32 seq816 147 2e-30 seq905 122 6e-23 seq59 118 8e-22 seq1695 96.9 3e-15 >seq2474 Length=9524 Score = 152 bits (168), Expect = 4e-32 Identities = 213/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 69019 CCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGA 69078 ||| ||||| || ||| |||||||||||| || ||||| ||| | | |||| Sbjct 8897 CCATACTGAGAATCGGAGGGCTTGAGGACACAGTTTACAAAGATTATCCTACTGATGTGA 8956 Query 69079 ACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGA 69138 | || ||||| || || || | || | | || || ||||| || | ||| ||| Sbjct 8957 AGGGGTGGGGGAAATTCTACCTTCCAAAGACTGTAACCATGCACGTTGTTGGTGTGGTGG 9016 Query 69139 CGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGT 69198 ||| | ||| || |||||||||||||| ||||||||||| |||||| | |||||| Sbjct 9017 AGGGCATCTCATGCCCGTGTGACCAGCTTGTTCTGATGACCTGTGAGGACAAACAGGTGT 9076 Query 69199 ACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAG 69258 | | ||| || | ||| ||||||||| |||| ||| | |||| ||| | | || | Sbjct 9077 ATGTCTACGATGAAGAGGAGCTGCATCTGGTAGCTTCAAGCATGGAGCAGCTACGTGAGG 9136 Query 69259 AAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 | ||||| | ||||| |||||| ||| |||||| ||||||||||||||||| | ||| Sbjct 9137 AGGGAATGACGTATCCAGCATTCAAGACCTATTACAATGGGGAGGCCTTCAAAGACATG 9195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||| ||||||||||| |||||||| || || |||||| ||| | ||||||||||| || Sbjct 9304 GACCCAGGAGGACTGGAAGAAGGTGTGGGAGGGCCCTGTGGGGAGGAGGTTGGATGAAGA 9363 Query 69377 GCATCATAAACTGGTGG 69393 |||| | |||||||||| Sbjct 9364 GCATAAAAAACTGGTGG 9380 >seq816 Length=50485 Score = 147 bits (162), Expect = 2e-30 Identities = 212/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 69019 CCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGA 69078 ||| ||||| || ||| |||||||||||| || ||||| ||||| | |||| Sbjct 46778 CCATACTGAGAATCGGAGGGCTTGAGGACACAGTTTACAAAGATTATCCTGCTGATGTGA 46719 Query 69079 ACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGA 69138 |||| ||||| || || || | || | | || || ||||| || | ||| ||| Sbjct 46718 ACGGGTGGGGTAAATTCTACCTTCCAAAGACTGTAACCATGCAAGTTGTTGGTGTGGTGG 46659 Query 69139 CGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGT 69198 ||| | ||| || ||||||||||| || ||||||||||| |||||| | ||||| Sbjct 46658 AGGGCATCTCATGCCCGTGTGACCAGCTCGTTCTGATGACCTGTGAGGACAAACGGGTGT 46599 Query 69199 ACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAG 69258 | | ||| || | ||| ||||||||| |||| ||| | |||| ||| | | || | Sbjct 46598 ATGCCTACGATGAAGAGGAGCTGCATCTGGTAGCTTCAAGCATGGAGCAGCTACGTGAGG 46539 Query 69259 AAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 | ||||| | ||||| |||| | ||| |||||| ||||||||||||||||| | ||| Sbjct 46538 AGGGAATGACGTATCCAGCATCCAAGACCTATTACAATGGGGAGGCCTTCAAAAACATG 46480 Score = 109 bits (120), Expect = 4e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 69075 GTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTAT 69134 ||||| || ||||| || || || | ||| ||| | ||| |||| |||||| Sbjct 4925 GTGAATGGCTGGGGGAAATTCTACCTTCCCGAGATCGTAAACATGAAGGTTATCGGTGTG 4866 Query 69135 GTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAG 69194 || ||| || | | | ||||| || || || ||||||||||| |||||| | ||| Sbjct 4865 CTGGAGGGCACCTCGTGTCCTTGTGAGCAACTCGTACTGATGACCTGTGAGGACAAAAAG 4806 Query 69195 GTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGG 69254 |||||| ||| || ||||| ||||| ||| |||||||| || | || | | | Sbjct 4805 CTGTACGCCTACGATGGAGAGGAGCTTCATCTGGTGGCTCCAGGTTTTGAGCGACTACGT 4746 Query 69255 GAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACAT 69314 || ||| ||| | ||||| |||| | ||||||| || ||||||||||||||||| | Sbjct 4745 GACAAAGAAATCGAGTATCCAGCATCCAAGAGCTACTACAATGGGGAGGCCTTCAAAGAC 4686 Query 69315 ATG 69317 ||| Sbjct 4685 ATG 4683 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||| |||||||||||||||||||| || || |||| | ||| | ||||||||||| || Sbjct 46366 GACCCAGGAGGACTGGGAGAAGGTGTGGAAGGGCCCGGTGGGGAGGAGGTTGGATGAAGA 46307 Query 69377 GCATCATAAACTGGTGG 69393 |||| | |||||||||| Sbjct 46306 GCATAAAAAACTGGTGG 46290 >seq905 Length=872545 Score = 122 bits (134), Expect = 6e-23 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| || || || || ||||||||||| || || || Sbjct 152683 AGTCCTGTAATGTGTGCGATCATGTAGGTAAGAAGTGAATAGCTGGCGATATTGAAAGGC 152742 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || ||||| || || || | |||||| ||||||||||| ||||| ||||| | Sbjct 152743 ACCCCCAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCACCATCACAY 152802 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || ||||| || | |||||||| || || || ||||| Sbjct 152803 ACATAGAACTGGCAGAGTGCGTGGCAGGGTGGCAGCGCCAT 152843 Score = 122 bits (134), Expect = 6e-23 Identities = 132/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||| || || |||||||| ||||| || || | ||||| || || Sbjct 153185 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATATATAGGTCCTAGATC 153244 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || || | ||| || |||||||| ||||||| ||||| ||||| || Sbjct 153245 ACCCTCCTCTCTATCAGTGAACCCAAGATTGTCCAAGAAGTCTCGAGAACCATTGGCATC 153304 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 27662 ||| ||||| || || ||| | || ||||| ||||| ||||| || || ||||| Sbjct 153305 CCAAATCTTCACGCCTTTCGCTGAAAGCTCCTTGGAATTTGTTGATCC-CTGAC 153357 >seq59 Length=66814 Score = 118 bits (130), Expect = 8e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 69075 GTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTAT 69134 |||||||| |||||||| || || | |||| ||| | ||| |||| |||||| Sbjct 7567 GTGAACGGCTGGGGAAAATTCTACCTTCCCAAGATCGTAAACATGAAGGTTATCGGTGTG 7626 Query 69135 GTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAG 69194 || ||| || | | | ||||| || || || ||||||||||| |||||| | ||| Sbjct 7627 CTGGAGGGCACCTCGTGTCCGTGTGAGCAACTCGTGCTGATGACCTGTGAGGACAAAAAG 7686 Query 69195 GTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGG 69254 |||||| ||| |||||||| ||||| ||| |||||||| || | || | | Sbjct 7687 CTGTACGCCTACGACGGAGAGGAGCTTCATCTGGTGGCTCCAGGTTTTGAGCGACTACAT 7746 Query 69255 GAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACAT 69314 || ||| ||| | ||||| |||| ||||||| || ||||||||||||||||| | Sbjct 7747 GACAAAGAAATCGAGTATCCAGCATCTAAGAGCTACTACAATGGGGAGGCCTTCAAAGAC 7806 Query 69315 ATG 69317 ||| Sbjct 7807 ATG 7809 >seq1695 Length=687303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 69156 TGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGAC 69215 ||||| || || || ||||||||||| |||||| | ||| |||||| ||| || ||||| Sbjct 679030 TGTGAGCAACTCGTACTGATGACCTGTGAGGACAAAAAGCTGTACGCCTAMGAYGGAGAG 678971 Query 69216 GAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCT 69275 ||||| ||| |||| | | || | || || | | || ||| ||| ||||| Sbjct 678970 GAGCTTCATCTGGTCGTTTCAGGTTTTGAGCAACTACGTGACAAAGAAATCAAGTATCCA 678911 Query 69276 GCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 ||| | ||||||| || ||||||||||||||||| | ||| Sbjct 678910 TCATCCAAGAGCTACTACAATGGGGAGGCCTTCAAAGACATG 678869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 69156 TGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGAC 69215 ||||| || || || ||||||||||| |||||| | ||| |||||| ||| || ||||| Sbjct 683141 TGTGAGCAACTCGTACTGATGACCTGTGAGGACAAAAAGCTGTACGCCTAMGAYGGAGAG 683082 Query 69216 GAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCT 69275 ||||| ||| |||| | | || | || || | | || ||| ||| ||||| Sbjct 683081 GAGCTTCATCTGGTCGTTTCAGGTTTTGAGCAACTACGTGACAAAGAAATCAAGTATCCA 683022 Query 69276 GCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 ||| | ||||||| || ||||||||||||||||| | ||| Sbjct 683021 TCATCCAAGAGCTACTACAATGGGGAGGCCTTCAAAGACATG 682980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369477311139947