Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1696 488 8e-133 seq34 96.9 5e-15 >seq1696 Length=952724 Score = 488 bits (540), Expect = 8e-133 Identities = 1294/1963 (66%), Gaps = 27/1963 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| | |||||| || | || | || || ||||| || Sbjct 105957 TTCTTCATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTG 105898 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| ||||| |||| || || || ||||| || || ||||| || | || Sbjct 105897 ACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 105838 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || |||||||| || |||| || Sbjct 105837 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGC 105778 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || ||| | || || || || || ||||| ||||| || Sbjct 105777 AGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGG 105718 Query 77301 TCTGAAGGTACAACATC--CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 || | || | | || ||| | ||||| || | || || ||||| | || | Sbjct 105717 TCCGTTGG--CGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGAAC 105660 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | | || || || || || || | | | |||| ||||||||||| |||| || Sbjct 105659 CTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAG 105600 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| ||||| || || || || | | ||||| || || ||| || ||||| | Sbjct 105599 CGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATG 105540 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 ||||| | | || |||||||| || || ||||| || |||||||| || || || || | Sbjct 105539 GATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGT 105480 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | |||| || | || || ||| | || || || || ||||| ||||| || | Sbjct 105479 GGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGT 105420 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | | ||||| |||| |||||| ||| ||||| ||| ||| | | | | Sbjct 105419 TTAAGTTTCTGACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCGCT 105360 Query 77659 C---TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 | | | || ||||||| | ||| || || || ||||| || || || ||||| | Sbjct 105359 CAGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCT 105300 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | ||| |||| | || || || || || || || || ||||| || |||||||| | Sbjct 105299 TGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCT 105240 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | ||||||||||| | ||||| | || || || || || |||| ||||| ||||| Sbjct 105239 GCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTG 105180 Query 77836 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCGC 77894 ||||||| || || || | | ||| | | || ||| || | || | ||| | | Sbjct 105179 TCTGTGACTCAATGATGGCGTACCACAGCTGCT-GAGCCTTCACCACACGCTTGACCCTC 105121 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | ||| | || ||| || || ||| ||||| || || ||||| || |||| Sbjct 105120 CCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 105061 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || ||||| || || ||||||| |||||||| ||| | || || | ||||| Sbjct 105060 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATG 105001 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 ||||| ||||| ||||| || || || || || | | || || ||||| ||||| Sbjct 105000 AAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCC 104941 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || ||||| || || || || || || | | |||| ||||||| || || || || || Sbjct 104940 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATG 104881 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | |||| |||| ||| || || ||||| || | || | || ||||| || || Sbjct 104880 GCGAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAG 104821 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || |||| ||| || | | || || || || || || |||| || || || || Sbjct 104820 ACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCT 104761 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 ||| | || || | | || || ||||| || ||| || || || || ||| Sbjct 104760 GTTGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCG 104701 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || | |||| ||| |||||||| ||||| || ||||| ||| |||| ||| || || Sbjct 104700 CATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAG 104641 Query 78375 CAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 |||||||||| || || || ||||| ||||| || | || ||||| || || Sbjct 104640 CAGCTAGACAGCTGTGGCCTGTTG----GTTCCAGCATTGAAGAGGGTTGGAGAGGCGTG 104585 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG 78490 || ||||| || || || || || ||||| || || || |||| || || ||| Sbjct 104584 GGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCC 104525 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 || ||||| || || || | ||| | ||| || || || | ||| || ||| | | Sbjct 104524 GTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTC 104465 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 || |||| || ||| || |||| ||| || || || || ||||||| || || || Sbjct 104464 AATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 104405 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCA-TGA 78669 ||| ||||| || || | || || || || |||| | | ||||| || | | Sbjct 104404 TCTGTCGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTTGCGAGAACAACCTCGAGCGT 104345 Query 78670 CAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATA 78726 | | | ||||| || || || || | || || ||| || | |||||| | | Sbjct 104344 CTCT-TTCGAAATCATGGGGGA--GT-GGCGTTTGTTCAAAGGGTTGATGTAGTTATACA 104289 Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786 || ||||| ||||| || || | ||| || || || ||||| || || || || || | Sbjct 104288 GGTCCTCCATGACATCGCTGAACACTTTCTTCGTCTCTTTGTGCAGGTTGGAGACGGCGA 104229 Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846 | | |||||| || || || || || || | || || || |||||| || || |||| Sbjct 104228 TGCGTGCAGCGAGGATGGCGTAGTCGGGGTATTTGGTGGTGAGAGTGGCAGCAATCTCTG 104169 Query 78847 CCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 |||| | | || | ||| | || |||||||| | || | || || || || |||| Sbjct 104168 CCGCCAGTGTGTCGAGCTCCACGGTGGTGACCCCGCTGTACAAACCCTGGATCACCTTCA 104109 Query 78907 TGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATA 78965 | | ||| | | | || || |||||||| ||||| ||||| || || |||| ||| Sbjct 104108 TAGTGATCTGGGCTGGGTCAACAAACTCCAAGTTCAGCCCATAGCA-AAGCTTCTGGATA 104050 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||||| |||||||||||||| || ||| ||| | || ||||| Sbjct 104049 CGAGAGGTGATTTTATCAAACATGACACGCTCTTGGCGTCCAT 104007 >seq34 Length=1455329 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || || || |||||||| || ||||||| |||||||||||||| || |||||||| | Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | ||||| ||||| ||| | || || || ||||| |||| ||||| || ||| Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGATA 919743 Query 77853 G 77853 | Sbjct 919744 G 919744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694611168539680