Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1696 486 3e-132 seq34 91.5 2e-13 seq1698 84.2 3e-11 >seq1696 Length=952724 Score = 486 bits (538), Expect = 3e-132 Identities = 1314/1996 (66%), Gaps = 33/1996 (2%) Strand=Plus/Minus Query 75626 TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTC 75685 ||||||||||||| | || || | ||||| || || || |||||| | ||| Sbjct 105987 TGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCTC 105928 Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 || || | || | || || ||||| || || || ||||| ||||| |||| || || Sbjct 105927 TCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTG 105868 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 || ||||| || || ||||| || | || | || || ||||| |||| || || || Sbjct 105867 CGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCG 105808 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 75865 || || || || ||||| || |||| || | || || || | || ||| | || Sbjct 105807 GTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACC 105748 Query 75866 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATC--CCAGAGATCGT 75923 || || || || ||||| ||||| || || | ||| | | || ||| | |||| Sbjct 105747 TTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGG--CGTCTTCTTCCACATGTCGT 105690 Query 75924 ATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTT 75983 | || | || || || || | || || | || || ||||| | |||| | Sbjct 105689 ACTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGG 105630 Query 75984 CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 | |||| || ||||||||||| | ||| |||| ||||| || || || || | | | Sbjct 105629 CGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGT 105570 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | || || || ||| | || ||||| |||||| | | || ||||| || || || | Sbjct 105569 TGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCA 105510 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 ||| || |||||||| || || || || || | | |||| || | | || ||| | Sbjct 105509 ATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCA 105450 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGT 76223 ||||| || || || || ||||| || || | |||||||||| |||||| ||| Sbjct 105449 CTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG 105390 Query 76224 CCTTTAGTTTGAGAAAATCAAATTTTC---CATCTATCACAAACATATTAAGAGCTATAG 76280 ||||| ||| ||| | | | || | | || |||| || ||||| || | Sbjct 105389 ATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGG 105330 Query 76281 ATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCA 76338 | || ||||| || || || ||||| | | || ||| |||| | || || ||||| Sbjct 105329 AGGCCAGATTGCAGACAGCCACCTCGTCCTTGC--TGGTGTATTCGACGATTTCTGTGCA 105272 Query 76339 TAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTC 76398 || || || |||||||| || || ||||| || ||||||||||| |||| || | || Sbjct 105271 GAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTC 105212 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA- 76457 || || || | |||| || |||||||| ||||||| || || || | | ||| | Sbjct 105211 TTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAG 105152 Query 76458 CGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTC----ATATTGTGTATAT 76513 | || ||| || | | | ||| | || | ||| ||| || | ||||| | Sbjct 105151 CTGCT-GAGCCTTCACCACACGCTTG--ACCCTCCCCTCCTTCTCGTATCTGGTGTAGAG 105095 Query 76514 AACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATC 76573 || ||||| || || ||||| || |||| || || || || |||||||||| Sbjct 105094 CTCC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATC 105037 Query 76574 AATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 76633 | ||||| || ||| | || |||| ||||| ||||| ||||| ||||| || || Sbjct 105036 AGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCG 104977 Query 76634 ATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAAC 76693 || || || | | || | ||||| ||||| || ||||| || || || ||||| Sbjct 104976 TAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAG 104917 Query 76694 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTA 76753 || | | |||| ||||||| || || || || || || | | || |||| ||| || Sbjct 104916 TCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG 104857 Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || ||||| || | || | |||||||| || || || |||| ||| || | | || Sbjct 104856 CCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCA 104797 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || || || |||| || || || || || | || || | | | Sbjct 104796 TTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCT 104737 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || ||| ||| ||||| || || || | |||| |||||| |||||| Sbjct 104736 ACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATG 104677 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG----ATGATG 76989 ||||| || || || ||| |||| ||| || || |||||||||| || || || Sbjct 104676 CCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTG 104617 Query 76990 AACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAG 77049 ||||| ||||| || | || ||||| || || |||||||| || || || || || Sbjct 104616 ----GTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 104561 Query 77050 ATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCAT 77109 ||||| || || || |||| || |||||| || ||||| || || || | ||| Sbjct 104560 GTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCAT 104501 Query 77110 CAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 77169 | ||| || || || || || | ||| | | || |||| || ||| || || Sbjct 104500 GAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTC 104441 Query 77170 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 || ||| || || || || ||||||| || || ||||| ||||| || || |||| || Sbjct 104440 CAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTT 104381 Query 77230 TAGTTTGTCCTTATATTTGGTAACAATATCCA-TGACAGTGGTAGAAATAATTGGAGATC 77288 || |||||| | | | ||||| || | | | | | ||||| || || || Sbjct 104380 GAGGCGGTCCTTGTTTGCGAGAACAACCTCGAGCGTCTCT-TTCGAAATCATGGGGGAGT 104322 Query 77289 GTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtt 77348 | | || ||| || | |||||| | | ||| ||||| || ||||| || | || Sbjct 104321 GGCGTTTGTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACTT 104262 Query 77349 tttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAG 77408 | || || || ||||| || || || ||||| || | ||||| || || || ||||| | Sbjct 104261 TCTTCGTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCGG 104202 Query 77409 GATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAG 77468 | | || || ||| ||||| || || |||||||| | || || | || | || | Sbjct 104201 GGTATTTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTGG 104142 Query 77469 TAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACT 77528 | || ||| | || | || || || || ||||| | || | | || || ||||||| Sbjct 104141 TGACCCCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAACT 104082 Query 77529 CGGTGTTCAAACCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGACA 77587 | ||||| ||||| || || |||| |||||||| ||||||||||||||||||||| Sbjct 104081 CCAAGTTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGACA 104023 Query 77588 TTCTCCTTACATCCAT 77603 ||| | | ||||| Sbjct 104022 CGCTCTTGGCGTCCAT 104007 >seq34 Length=1455329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || ||||||| ||||||||| |||||||||||||| || || || || | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || || | || | ||| | | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 77114 ATATGCTGAGGTC 77126 || ||||| |||| Sbjct 923419 ATGTGCTGGGGTC 923431 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 || || ||||||||||| || | ||||| || || |||||||| || |||||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || | ||||| ||||| | | | || || |||||||| |||| ||||| || ||| Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGATA 919743 Query 76448 G 76448 | Sbjct 919744 G 919744 >seq1698 Length=2458952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || || || ||||| | ||||| || | || || ||||||||||| || | ||| || Sbjct 826485 TCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCTTT 826426 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| | ||||| || || || ||||| ||||| ||||| || ||||| || || || Sbjct 826425 AACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAGCC 826366 Query 46774 ACAAGTCTCTCTCC 46787 |||| |||||| || Sbjct 826365 ACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712875253179840