Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq4206 132 3e-26 seq4683 82.4 5e-11 >seq4206 Length=1751 Score = 132 bits (146), Expect = 3e-26 Identities = 280/414 (68%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 58583 TAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACA---GGAATTGCAGCAGC 58639 |||||||| || || |||||||| |||||||| ||||| |||| | | |||| || Sbjct 1345 TAATCGCCTGTCAGATTGATGTGTTCCCAGCCTAGCGGGGACAAATGCGACAGCAGTTGC 1404 Query 58640 TCGCCG---TCCACCGGCTTGCCGGCCTC-GACCAACCCCTGGGTGGCGCGTTCCAGGTA 58695 ||| | | ||| ||| | || || || || | | | | | ||||| || Sbjct 1405 TCGTTGATCTTCACTCCCTTAC--GCTTCAGAGCATCGACCG-----CTCTTTCCATATA 1457 Query 58696 CACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCG 58755 || || |||||||| || || || |||| || | || || ||||| || |||| Sbjct 1458 TACGGTATTCCACAGGGATATGGCAGCTGTCAGAAGCGTCAGTCCACTGGCGCGATAGCT 1517 Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815 ||| | || | || ||||||||||| || || |||| | || ||||| | || Sbjct 1518 CTGATTTTCCGGTTTTCGGTCCCTGATTTCTCCCAGCCGGTGCATAAATACCGCTCGCGC 1577 Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| ||| || || |||||||| ||||| || || || || || || |||||| || Sbjct 1578 CAGCGCGTTACGGGCTTCACCTTTATTCAGCCCCGCCTGTACCCGCCGACGCAGTGCAGG 1637 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | | | |||||| || || |||||||| || || || ||||| | || | || || Sbjct 1638 ATCGCGGAACCAGTCGAGCATAAACAGCGTTCGTTCAATACGGCCAATTTCCCTCAATGC 1697 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGA 58989 ||| |||||||| || ||||||||| | ||||| ||||||||| || Sbjct 1698 TTTGGCTAGTCCGTTTTGTTTGGGGTAGCTGGCAAGCTTTTTCAGCATCAGGGA 1751 >seq4683 Length=1485 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 99544 TGGTGCCGATTAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCA 99603 |||||||| || |||| |||||| | |||| | ||| ||||||| ||| ||||||||| Sbjct 1242 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 1301 Query 99604 ACTGAGCTAAACCGGCAT 99621 |||||||||| ||||||| Sbjct 1302 ACTGAGCTAAGCCGGCAT 1319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330872434080742