Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq314 114 2e-20 seq9 109 8e-19 seq268 100 4e-16 >seq314 Length=1288623 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || ||||||||||||||||||||| |||||||||||||| || |||| | ||| Sbjct 648532 CCTCCAAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAAGCCC 648591 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || |||||||| |||||||||| ||| | || | || || || || | || || | | Sbjct 648592 TTAAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAAATACCATTAGGTCTG 648651 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 || || ||||| | | || | ||| ||||||||||| || || || || || | || Sbjct 648652 GGTTTCTCCACTAGCAGGCCTGGGTAGAGCTCCACAGCATCAACATCCCCATACATTTCC 648711 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||| || || || ||||||| Sbjct 648712 TCCAGCAGTGCAGCCATTTCTTTCTCTCCTG 648742 Score = 102 bits (112), Expect = 1e-16 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | ||| || || | |||||||| ||| || ||| ||| | || || Sbjct 650283 TCACCAATTAGGATAAGACGTGCAGTCTGGAAGAGTCTTTCATCATCCCAGTAAGGGTGA 650342 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | ||||| ||||| ||||| | ||||||||| | |||||||| || || |||||| Sbjct 650343 ACCTCTTTCAATACATCACACACACGGTTGTGTTCACGAAGCCAGATGGTAGCATACATC 650402 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || || || ||||||||||| ||||| || || ||||| | || | || || Sbjct 650403 ATCAGACCGGGAACCAGGCCAAATGCCTCGTGGCCAACAGCAAAGCGGAGAGAATCTGGG 650462 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | |||||| || ||| | || || || || || | ||||| ||||| || Sbjct 650463 ACGTGGGGAGGGTAATGCATTTCAACACCCACTTCCTTAACTGTCGGGGGGTACATCTCT 650522 Query 9472 CCGTCAATCATCTG 9485 || |||| ||||| Sbjct 650523 CCATCAAGGATCTG 650536 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| || || | ||| ||||| ||||||| || || || || || || || | Sbjct 651282 TCACCTACTACTCCCATAGGGGTTGGGCAATCGTCGGGCACAGGGGGGAGGGCCCGTGTG 651341 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || |||||| | ||||||||||| ||| || || ||| |||| || | Sbjct 651342 TAATAGGAAAGGTTGGAGTAGGCTTCCCAGCTCTTGTAATCATAATCCACGTTATAAGTC 651401 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 ||||| || ||||||| || || Sbjct 651402 GGAGGACTATCAATCATATGGG 651423 >seq9 Length=473932 Score = 109 bits (120), Expect = 8e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| ||| || || | | ||| | |||||| ||| | Sbjct 223595 GGACACCACTTGGTGTTGAGACACACCAGTTTTTTCAAAGTGGACTTCTTGATGATATTG 223654 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || || |||||||||||||||||||||||| | || ||||||||| ||| Sbjct 223655 AAGCCGGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGTGAGCAGATGGGGTTT 223714 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| || ||||| ||||| |||| ||| | ||||||||||| || || Sbjct 223715 CCGAGCAGGCCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATT 223774 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | | ||| | || |||| || || | ||| | ||||| || || | ||| Sbjct 223775 GCATCAGCACGAGCTTTCTCCAGCATTGTGCCTGGGTAAAACTCCAGCGCATCTATGTCA 223834 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 223835 CCGTAGAG 223842 Score = 105 bits (116), Expect = 1e-17 Identities = 178/257 (69%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 9219 AATGTTGATGGTT--TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCA 9276 |||||||| || || |||||||||||||| | ||||||||||| || ||||| ||| Sbjct 227122 AATGTTGACTTTTACTCACCGATAATGATGAGCCTGGTGGTCTGGAAAAGCTGCTCATCA 227181 Query 9277 CTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAG 9336 ||| ||||||||| ||||| | || || || ||||| || ||||| ||||| Sbjct 227182 TCCCAGGTGGGATGTTCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCAT 227241 Query 9337 ATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGA 9396 | ||||| ||||| | || || || | | ||||| || ||||||| |||||| Sbjct 227242 AGGGTGGCATACATGCTTAGACCCGGCAGGATTCCAAATAATTCCTGACCGATGGCCAGA 227301 Query 9397 CGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAG 9456 ||| ||| | || | | |||||| | |||||| || |||| || || | Sbjct 227302 CGCTTGTCAGCAGGGATATTTTCAGGATACACCATGTGAACAGGGACCTCAGATACTGCA 227361 Query 9457 GGGGGATACATTTCACC 9473 || || ||||| ||||| Sbjct 227362 GGAGGGTACATCTCACC 227378 >seq268 Length=824967 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||||| | || || |||||||||||||||||||| | || || || || || Sbjct 89430 CGAAGCCCACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTATTCTGGAGAACATATAGGGT 89489 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| ||||||||| |||||||| || || |||| ||| | ||||| || || || | Sbjct 89490 TTCCCAGGAGGCCTTTTAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 89549 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | || || || | || |||| || || || | ||| | ||||| ||| || | || Sbjct 89550 TAGCCCCTGGTCGTGTTTTCTCCAACATCAAGCCAGGGTAAAACTCCAGAGCATCAATGT 89609 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 89610 CACCGTAGAG 89619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716817326108480