Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33 132 1e-25 seq1605 131 4e-25 seq292 86.0 2e-11 >seq33 Length=2144867 Score = 132 bits (146), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||| ||||| || || || |||||||| ||||| | ||| || | Sbjct 1190743 CAGATCTTYGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTG--AGCCCAGTG 1190800 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| ||| ||||| ||||| || || || || || || ||||||| Sbjct 1190801 ACACCATTGAGAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 1190860 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 1190861 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 1190920 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || || || || | ||||| Sbjct 1190921 TCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAG 1190960 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || |||||||| ||||| || || ||| Sbjct 1190515 CAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 1190572 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || || || || || |||||||||||||| || ||||| ||||||| Sbjct 1190573 ACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAGC 1190632 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 1190633 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 1190692 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 1190693 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 1190732 Score = 129 bits (142), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 1213256 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 1213313 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || || || |||||||||||||| || || || ||||||| Sbjct 1213314 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTGACCAGC 1213373 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | ||||| | || || ||| Sbjct 1213374 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAACA 1213433 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || || || || ||| Sbjct 1213434 TCCAGAAGGAGTCCACCCTCCACCTGGTT 1213462 >seq1605 Length=404251 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| || ||||| || ||| Sbjct 108431 CAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 108374 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| ||||||||||| || |||||||| ||||||| Sbjct 108373 ACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAGC 108314 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| ||||| ||||| |||||||| | || || |||| || ||| Sbjct 108313 AGAGGCTCATCTTCGCAGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 108254 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 108253 TCCAGAAGGAGTCCACCCTCCACCTGGT 108226 >seq292 Length=2496335 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| |||||||| ||||| || ||||| || ||||| |||||||| || ||| Sbjct 578109 CAGATTTTTGTGAAAACACTCACCGGTAAAACCATTACCCTTGAGGTGGA--GCCCAGTG 578166 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||| |||||||| |||||| || || || ||||||||||| Sbjct 578167 ACACTATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGG 578209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203628838836578