Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq338380 113 5e-20 seq1 105 8e-18 seq325 87.8 2e-12 >seq338380 Length=902 Score = 113 bits (124), Expect = 5e-20 Identities = 169/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 50441 TCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCG 50500 || ||| ||||||||| ||| |||| ||| ||||| || |||||||| || Sbjct 593 TCCATCGGCAACTTCGCCTCGCGCCTGCTGGTGCTGATGTTCCCCGAGCTCTTCACCTAC 652 Query 50501 GAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACCC 50559 |||||| || || | ||| ||||||| |||||| |||||||| |||| || ||||| Sbjct 653 GAGAACGCGCGCAAGAACTACAACTGCAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACCC 711 Query 50560 GCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCG-GCGGCGCGCAACG 50618 | || || | || |||| ||||| |||||| ||||| ||||| ||| | | |||| Sbjct 712 CGTGCGGGTGAACCTGATCCGCCACTACGTGCAGCTGCTGTACCCGCGCGCCAAG-AACG 770 Query 50619 AGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 | ||||| |||| ||||| ||| |||||||||||||||||||| || Sbjct 771 ACCGCGTCTGGACGCTGGAGTTCGTGGGCAAGCTGGACGAGCGCTGCCGGCGACG 825 >seq1 Length=2047057 Score = 105 bits (116), Expect = 8e-18 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 ||||||||||| ||||| || ||||| || | ||| ||||| |||| ||| || | Sbjct 1721953 AACTTCTCGAAATTCCAAGCGACGTCATTCCTGCAGACTGGGCTCCAGATGATGCACTTG 1722012 Query 83204 GGGTCGCTCA-CGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGC-CTCTCGTAGGA 83261 |||||| ||| | || || | ||||||||||||| ||| || |||| | |||| Sbjct 1722013 GGGTCGGTCATCAAGGATG-TGGTGTCGTCGCTAGGGAACGGAAGTTTACTCTTG-AGGA 1722070 Query 83262 AGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 | ||| | || | ||| |||||| |||| || || |||||| | ||| || Sbjct 1722071 AAAGGAACAAGGGGTCTGCATCCTTGC--CGTTCACATCCACCTTCTCCAGCAGCTGGAA 1722128 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 || ||||| ||||| || || |||||||||||||||||||| | | |||||| |||| Sbjct 1722129 TTTGGGCTCAAAGCCCTTGCCTGGACGGACGTGCTTCAGGGACTGGATAATCTCGTCATT 1722188 Query 83380 CT 83381 || Sbjct 1722189 CT 1722190 >seq325 Length=385611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || ||| || || || |||||| | | || Sbjct 263185 CCTGGTGTCCGAACTGGTTGCAGGGAGCCCCCAGAACCACGAGCCCCTTTTCAGCGTAGC 263244 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || || |||||||||||||||||||| |||| ||| || | |||||||| ||||| | Sbjct 263245 GCGTATGGAGCTCGTTCATCTGAGTGTAGTCCCTGACGGTCGTGCCTCAGAGTGACGCGA 263304 Query 83511 CGTTCTCGATGAG 83523 | ||||| || || Sbjct 263305 CATTCTCAATAAG 263317 Score = 82.4 bits (90), Expect = 9e-11 Identities = 182/271 (67%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||||| ||| | | |||||||||||| |||||| | |||||| | ||| || || Sbjct 262552 CCGTCAGGACCAATGAGGAACTTCTCGAAATTCCAGCTGATGTCGTTCCTGCAGACCGGG 262611 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 ||| |||| | || || ||| ||| | ||||||||| || | ||| Sbjct 262612 CTCCATATGATGAATTTTGGATCATTCATGAGGGACAGGGAGTCGTCGCTGGGAGAAGGC 262671 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACT 83303 || || |||||| |||| | || ||||| |||||| | || || || || Sbjct 262672 AGTTTTTCCTTGAGGAAGACGAACAAGGGGTGTGCGTCCTTGC--CATTCACATCCACCT 262729 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 |||| | ||| ||| || |||||||| || || |||||||||||| ||||||||| Sbjct 262730 TCTCCAGCAGCTGAAAATTAGGCTCGAAACCATTTCCAGGACGGACGAACTTCAGGGACT 262789 Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || | || | | ||| ||||| Sbjct 262790 TCAATATTTCATCGTTATTGCAGTTCTCCTG 262820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604983083765920