Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq487837 134 1e-26 seq19981 120 3e-22 seq1686 109 6e-19 seq1395 91.5 2e-13 seq1736 87.8 2e-12 >seq487837 Length=248 Score = 134 bits (148), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 35 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 94 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| || ||||| ||| | |||||| Sbjct 95 GACACCATTGAGAA----AAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 150 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 151 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 210 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| ||||| | ||| |||| Sbjct 211 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCG 245 >seq19981 Length=13813 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 |||||||| ||||||| |||||||| || || || |||| || || || || ||| Sbjct 3623 GGCGAGCGTGTGGTGGCGTTCGCGGCTGTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCC 3682 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct 3683 GCCATCTTCTGGCTGAAGAAACGAGGCCTCATGCCGGGCCTGACCTTCTCCAACGAGCTC 3742 Query 117152 ATCTCCAGGGACGAGG 117167 ||| | | ||||||| Sbjct 3743 ATCAGCCGAGACGAGG 3758 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||| |||||||||||||||| | ||| | |||||| | |||| | | |||||| Sbjct 2416 AGGTTGACCTGTCCAAGGACATGCAGC-ATTGGGAGGGTCTGAAGCAGGAGGAGCGCTTC 2474 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 2475 TTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATTGTCAACGAGAACCTG 2534 Query 116804 GT 116805 || Sbjct 2535 GT 2536 Score = 105 bits (116), Expect = 7e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 |||| ||||| || ||||||||||| | |||||| || || |||||| ||| | Sbjct 4273 AGGGCCTGCACTGTGACTTTGCCTGCCTCATGTTCAGCCACCTGCGGCAGCGCCCGTCGG 4332 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | |||| || | |||| | ||| ||||| || |||||||||||| ||||| |||| Sbjct 4333 AGACGCGGGTGAAGGAGGTGATCAGGGACGCCGTGGCCATCGAGCAGGAGTTCCTGACCG 4392 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACG---ATGTCGCAATACATCG 117341 |||||||| || | ||| | || | || ||| ||| ||| | |||||| Sbjct 4393 GGGCGCTGCCCGTCAGCCTGATCGGGATGAACTGC---ACGCTCATGAAGAGCTACATCC 4449 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 |||| || |||||| | |||||||||||||||| Sbjct 4450 AGTTTGTGGCCGACCGCCTGCTGCTCGAGCTGG 4482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| |||||||||||||| | || || || || |||||||| || || Sbjct 2876 GGTGGAGCGCTTCAGCAAGGAGGTGCAGGTGACGGAAGCCCGCTGTTTCTACGGTTTCCA 2935 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | ||||| || ||||| Sbjct 2936 GATCGCCATGGAGAACATACACTCTGAGATGTA 2968 >seq1686 Length=76845 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || || ||| Sbjct 57606 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 57547 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | |||||| Sbjct 57546 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 57487 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| |||||||||||||| || | || || || |||||||||| Sbjct 57486 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 57427 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || || || || || |||| Sbjct 57426 ATTCAGAAAGAATCAACCCTTCACCTGGTCCTGCG 57392 >seq1395 Length=115546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || |||||||| |||||||| | || ||||| || ||||| || || ||||| ||| Sbjct 10607 GAACCGCTGCTTAAAGAGAACCCAAGGCGCTTCGTCATCTTCCCAATCCAGTACCCTGAC 10666 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 |||||| ||||||||| | || |||| || ||||||||||| |||||||| Sbjct 10667 ATGTGGAAGATGTACAAACAAGCACAGGCCTCCTTCTGGACCGTAGAGGAGGT 10719 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 |||| || | ||| ||| || |||||||| | ||||| |||| ||| ||||| || || Sbjct 11261 GGTCCAGAGGTTCAGTCAAGAAGTGCAGGTCCCAGAGGCACGGTCCTTTTACGGGTTCCA 11320 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| |||||||||||| ||||| || ||||| | |||||| |||| ||| Sbjct 11321 GATCCTCATGGAGAACGTCCACTCTGAGATGTACGGCATGCTCATCAACACTTAC 11375 >seq1736 Length=128588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||| | | || || |||||||| ||||| || || ||||| |||||| ||| Sbjct 24173 GAGCCACTGTTAAGAGACAATCCCCGCCGTTTCGTCATCTTTCCCATCAAATACCATGAC 24114 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||||||||| || ||||| || |||||||| | || ||||| Sbjct 24113 ATCTGGCAAATGTACAAAAAAGCTGAGGCTTCTTTCTGGACTGCTGAAGAGGT 24061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511991686604480