Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1736 120 4e-22 seq1395 105 1e-17 seq16493 84.2 3e-11 >seq1736 Length=128588 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| |||||||| || ||||| || || | ||| | Sbjct 22265 CCTCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCT 22324 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || ||||| ||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct 22325 TCAACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGG 22384 Query 50102 CAAC 50105 | || Sbjct 22385 CTAC 22388 >seq1395 Length=115546 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||| | |||||||||||||| ||||| | ||| | Sbjct 12894 CCTCATCTCTGCTGATAAGCTCATTGGAGTAGGTGAGTCCGGGCATGAGGCCTCTCTTCT 12835 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| ||||| |||||||| ||||| || || || || || ||||||| Sbjct 12834 TTAACCAGTAGATGGCTGCAAAGGACCCAGAGAAGAAAATCCCCTCCACCGCAGCAAAGG 12775 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| |||||| || Sbjct 12774 CCACAATTCTCTCCCC 12759 >seq16493 Length=15580 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || || ||| || | || || || || ||||| | Sbjct 3299 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3240 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | ||| || ||||| || ||||| |||| Sbjct 3239 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCGCGGTCCGCGGCCATCTTGATGATGGTCT 3180 Query 78905 TTTGTGGAATTTCCCA 78920 | || | || ||||| Sbjct 3179 TCTGGGAGATCTCCCA 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713769312842720