Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1686 170 4e-37 seq24 98.7 2e-15 seq90 91.5 3e-13 seq1736 89.7 1e-12 seq800 89.7 1e-12 >seq1686 Length=76845 Score = 170 bits (188), Expect = 4e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 ||||| || | || || || || | || |||||||||||||| || ||||| || ||| Sbjct 57383 CCTCTAAGACGCAGGACCAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCGGACAGA 57442 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 || | || ||||| || ||||| ||||| || || |||||||| || |||||||| || Sbjct 57443 GTACGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATG 57502 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||| ||||| || || ||||| || | ||| || || || || ||||| Sbjct 57503 CCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCC 57562 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 57563 AGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 57606 >seq24 Length=996480 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 |||||| |||||||| ||| | ||||| || | || |||||||| || | |||||||| Sbjct 407064 AGCATTGTGGTGGTACTATGTGTCTAAGGGTGTGGAGTACCTAGACACAGTGTTCTTCAT 407123 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 ||| || ||||| ||||| || | || || | ||||| || || || | || ||||| Sbjct 407124 CCTGCGTAAGAAGTTTAACCAGGTCAGCTTCTTGCATGTCTACCACCACTGCACCATGTT 407183 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 || | | ||||| || || || ||| | ||||||||||| Sbjct 407184 CACCCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 407225 >seq90 Length=1540152 Score = 91.5 bits (100), Expect = 3e-13 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||| || |||||||| || ||||| || | ||| ||||| ||||| ||||| Sbjct 1345696 CCTTCCTTATCTTGGATCTTTGCCTTCACATTCTCGATGGTGTCGCTGGGTTCCACCTCG 1345755 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || || || || || || | ||||| |||||||||||||| ||||| Sbjct 1345756 AGGGTGATGGTTTTCCCTGTCAACGTTTTCACAAATATCTGCATCTTTGT 1345805 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||||||||| ||||| |||| || | || ||||| || ||||| |||||||||| Sbjct 1345294 CTTTCTGAATATTGTAGTCTGATAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAAA 1345353 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | | | ||| ||||||||||| |||||| Sbjct 1345354 TCAAGCGCTGCTGATCAGGAGGGATTCCT 1345382 >seq1736 Length=128588 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| || || ||||| || ||||| || ||||| ||||| | ||||| ||| Sbjct 22388 GTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 22329 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| || || || ||||| || | || ||||| ||||| |||| ||||| || Sbjct 22328 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATCAGCAGAGAT 22269 Query 269258 GA 269259 || Sbjct 22268 GA 22267 >seq800 Length=212715 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| || |||| ||||| | || ||||| || || | ||||||||||| || Sbjct 34844 TGGTGGTACTACCTCTCAAAAGGTGTGGAGTACCTGGACACGGTTTTCTTCATCCTGCGG 34785 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT--TACTT 78611 ||||| || || || | || || || ||||| || || || | ||| ||||| | || Sbjct 34784 AAGAAGTTCAACCAGGTCAGCTTCCTGCATGTGTACCACCACTGTACCATGTTCATCCTC 34725 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||| ||||| || || || ||| |||| |||||||| Sbjct 34724 TGG--TGGATCGGGATCAAGTGGGTCGCTGGAGGACA 34690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144005318368784