Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq487837 109 5e-19 seq422119 107 2e-18 seq1686 96.9 3e-15 >seq487837 Length=248 Score = 109 bits (120), Expect = 5e-19 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| || || | ||| |||||||| || |||||||| ||| || |||||| Sbjct 245 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 186 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | ||||||||| || || || ||||| ||| Sbjct 185 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 126 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | ||| | || ||| ||| ||| | || | ||| | | Sbjct 125 TCCTGGATCTTGGCCTT----TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 70 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || ||||| ||||||||| Sbjct 69 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATG 34 >seq422119 Length=456 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||||| ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 129 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 188 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || || | |||||| ||||||||||| |||||||| || ||| |||||| ||||| Sbjct 189 TGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCG 248 Query 145788 TCTC 145791 ||| Sbjct 249 ACTC 252 >seq1686 Length=76845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 |||||| || | || | ||| || || || ||||||||||| ||| || || || Sbjct 57391 ACGCAGGACCAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCGGACAGAGTACGGCC 57450 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||| ||||| ||| |||| | | ||||||||| ||||| || ||||| || Sbjct 57451 ATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTT 57510 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | ||| | || || ||| ||| | || | ||| | Sbjct 57511 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 57570 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || ||||| || || |||||||| Sbjct 57571 GGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 57606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469055946616320