Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq487837 179 7e-40 seq1686 158 2e-33 seq19981 96.9 6e-15 seq90 87.8 3e-12 seq2505 84.2 4e-11 >seq487837 Length=248 Score = 179 bits (198), Expect = 7e-40 Identities = 173/219 (79%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||||||| || |||||||| || |||||||| || ||||| || || | Sbjct 248 AGTCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 189 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || ||||| || |||||||||||| Sbjct 188 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 129 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||| ||| |||||||| ||| | || || |||| ||| Sbjct 128 TTGTCCTGGATCTTGGCCTT----TTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGT 74 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || ||||||||||||||||| |||||||| Sbjct 73 GATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 35 >seq1686 Length=76845 Score = 158 bits (174), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 68237 TCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAG 68296 ||| | ||| |||| |||| ||| || || || ||||| || ||||| || ||||| || Sbjct 57382 TCCTCTAAGACGCAGGACCAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCGGACAG 57441 Query 68297 TGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAAT 68356 || | |||||||| | ||| || || ||||| || || || || ||||| || ||||| Sbjct 57442 AGTACGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAAT 57501 Query 68357 GCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416 |||||||||||| || ||||| |||||||| ||| |||||||| | || || || Sbjct 57502 GCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTC 57561 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||| || || || ||||| || || || |||||||| Sbjct 57562 CAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 57606 >seq19981 Length=13813 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 9892 TTTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATT---CATGACGCCCGCCT 9948 |||||||||| || || | | || |||||| | || || |||||| ||| || Sbjct 9828 TTTAGAAGTCAGCTTCCAGAGTGAAGGTGTTGTCCACAGCCTTGGACATGACCCCCATCT 9769 Query 9949 TCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCT 10008 ||||||||||| || || ||| |||||||||| ||| ||||| ||||| ||| || Sbjct 9768 TCTGGTACTCCCCCACACGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGGGAGATGTTCT 9709 Query 10009 CCATGAAGTCAAAGGGGTTCTC 10030 |||||||||| ||||||||||| Sbjct 9708 CCATGAAGTCGAAGGGGTTCTC 9687 >seq90 Length=1540152 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 |||||||| ||||| ||||||||||| || |||||||||||| ||| | ||| || || Sbjct 1345696 CCTTCCTTATCTTGGATCTTTGCCTTCACATTCTCGATGGTGTC-GCTGGGTTCCACCTC 1345754 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| || || | || || || ||||||||||| Sbjct 1345755 GAGGGTGATGGTTTTCCCTGTCAACGTTTTCACAAATATCTGCAT 1345799 >seq2505 Length=101583 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || || ||||| ||||| || |||||||||||| | ||| || || Sbjct 72642 CCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCG 72701 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||||||| || | ||| || ||||| |||||||| Sbjct 72702 AGGGTGATGGTTTTTCCTGTCAAGGTTTTCACGAAGATCTGCAT 72745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915849034718560