Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq487837 140 3e-28 seq1686 120 3e-22 seq19981 111 2e-19 seq1395 86.0 6e-12 >seq487837 Length=248 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 35 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 94 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 95 GACACCATTGAGAA----AAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 150 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 151 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 210 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| ||||||||||| Sbjct 211 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCG 245 >seq1686 Length=76845 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| ||| Sbjct 57606 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 57547 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | ||||| Sbjct 57546 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 57487 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| |||||||||||||| || | || || || |||||||||| Sbjct 57486 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 57427 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 || || || ||| | || || || |||| |||||| | ||||| Sbjct 57426 ATTCAGAAAGAATCAACCCTTCACCTGGTCCTGCGTCTTAGAGG 57383 >seq19981 Length=13813 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || |||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 2536 ACCAGGTTCTCGTTGACAATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGGGAGATG 2477 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || |||||| | | |||| | |||||| | || |||||||||||||||| ||| Sbjct 2476 AAGAAGCGCTCCTCCTGCTTCAGACCCTCCCAATGCTGCATGTCCTTGGACAGGTCAACC 2417 Query 133399 T 133399 | Sbjct 2416 T 2416 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | ||||| |||||| ||| |||| ||| ||||||||||| ||||| | Sbjct 3758 CCTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATGAGGCCTCGTTTCT 3699 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || || || || |||| || || || |||||||| | Sbjct 3698 TCAGCCAGAAGATGGCGGCAAACGAACCGGAGAAAAAGATCCCTTCCACAGCCGCGAACG 3639 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||||| Sbjct 3638 CCACCACACGCTCGCC 3623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| |||| ||||| | ||||||||| |||| |||||| | |||| ||| || Sbjct 4481 CAGCTCGAGCAGCAGGCGGTCGGCCACAAACTGGATGTAGCTCTTCATGAGCGTGCAGTT 4422 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | ||| | || |||||||| |||| || || ||||||||||| || || Sbjct 4421 CATCCCGATCAGGCTGACGGGCAGCGCCCCGGTCAGGAACTCCTGCTCGATGGCCACGGC 4362 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 ||| ||| | ||| | || |||| | | ||| || ||| || || ||||||| Sbjct 4361 GTCCCTGATCACCTCCTTCACCCGCGTCTCCGACGGGCGCTGCCGCAGGTGGCTGAACAT 4302 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | ||| |||||||| || |||| ||||| Sbjct 4301 GAGGCAGGCAAAGTCACAGTGCAGGCCCT 4273 >seq1395 Length=115546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||| |||||| | ||||| || ||||| |||||||||||| ||| || || Sbjct 11375 GTAAGTGTTGATGAGCATGCCGTACATCTCAGAGTGGACGTTCTCCATGAGGATCTGGAA 11316 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||||||| |||| ||||| ||||||||||||||| ||| | || |||| Sbjct 11315 CCCGTAAAAGGACCGTGCCTCTGGGACCTGCACTTCTTGACTGAACCTCTGGACC 11261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497039542520320