Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq744 123 2e-22 seq79 96.9 3e-14 seq1686 91.5 1e-12 >seq744 Length=172919 Score = 123 bits (136), Expect = 2e-22 Identities = 114/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 |||||| |||| || || || || || || || || |||||||| || ||||| ||||| Sbjct 129703 AGTTACCAATGCTGTGATCACGGTGCCTGCCTACTTCAATGACTCCCAGCGTCAGGCTAC 129762 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| ||| |||| |||||||| || ||||| ||||| || || || || Sbjct 129763 CAAAGATGCTGGAACTATCTCTGGTCTTAATGTGCTGCGTATCATCAACGAGCCAACAGC 129822 Query 550510 TGCTGCACTTGCATATGGACTTG 550532 ||||||| |||||||||| |||| Sbjct 129823 TGCTGCAATTGCATATGG-CTTG 129844 Score = 102 bits (112), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 549956 TATATTTTGACATA--AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAA 550013 |||||||| | || ||| | |||||||| |||| | || || || | || | Sbjct 128793 TATATTTTTATATTTTAGAAAACATGTCAAAGGGGCCAGCTGTCGGCATCGACCTTGGGA 128852 Query 550014 CCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATC 550073 |||| || |||||| || |||| ||| |||| |||||||| || ||||||||||| | Sbjct 128853 CCACCTACTCTTGTGTAGGAGTTTTCCAACATGGAAAAGTTGAGATCATTGCCAATGACC 128912 Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 | |||||||| || || || ||| || | ||||| || ||||| | || |||| | Sbjct 128913 AGGGTAACAGGACCACCCCCAGTTACGTAGCATTCACTGATACTGAGCGATTGATTGGGG 128972 Query 550134 ATGCAGCAAAATATCAAG 550151 |||||||||| |||||| Sbjct 128973 ATGCAGCAAAGAATCAAG 128990 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || ||||||||||||| || || || || || || || |||||||| || |||| Sbjct 123937 ATGCTGTTGTAACTGTACCAGCTTACTTCAACGATTCTCAGCGGCAAGCTACAAAGGATG 123878 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| || | ||||| || || || ||||||||||| Sbjct 123877 CCGGGACCATTTCTGGGCTAAATGTACTAAGAATTATAAACGAGCCCACTGCTGCTGCCA 123818 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 123817 TTGCCTATGG-CTTG 123804 >seq79 Length=945648 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || |||||||| || || ||||| || || || |||||||| Sbjct 899511 GTTACAAACGCTGTTGTGACGGTACCAGCTTACTTCAATGATTCCCAGCGGCAAGCTACC 899570 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || || || ||| | || || |||||||| || || ||||||||||| |||||| Sbjct 899571 AAGGACGCCGGTACAATTTCAGGTCTAAATGTTCTGCGAATCATCAATGAACCAACTGCT 899630 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| |||||| | || || Sbjct 899631 GCTGCTATTGCTTATGGATTGGACAA 899656 >seq1686 Length=76845 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || || |||||||| |||||| ||| ||||| || | ||||| Sbjct 57386 CTAAGACGCAGGACCAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCGGACAGAGTA 57445 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || ||||| || || || || || || ||||| ||||||||||| ||| Sbjct 57446 CGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 57505 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || || || || || || |||||| || ||| || | | || || || Sbjct 57506 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACCTCCAG 57564 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || ||||| || || || ||||| Sbjct 57565 GGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 57606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4002793033582520