Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1095 147 2e-30 seq964 91.5 1e-13 >seq1095 Length=300654 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| |||| ||| || |||||||||||||| || | |||||||||||||| ||||| Sbjct 3077 AGCCCAGTGATGTGGGCGATCATGTACGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 3018 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | ||||||||| || |||| |||||| ||||| || || ||||| || || | | Sbjct 3017 ACACCTAACCCCATGTCTCCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATCACAC 2958 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || || ||||| |||| || |||||| || || || ||||| ||| || |||| Sbjct 2957 ACATAGAACTGGCACAGGGCGTGGCAGGGGGGCAGGGCCATCAGGGGCAGGTCT 2904 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || || || || || ||||||||||| ||||| || || |||| ||| Sbjct 2299 CATGTCTTTGTATTCAGCACCAAAGTGTCTCCACTGGAAACCGTAAACAGGGCCCAAGTC 2240 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || ||||||| || || |||||||||||||| || | ||| || || || || Sbjct 2239 CCCTTCCTCCCTGTTAGTAAATCCACTCTTGTCCAAAAAATCACGGGATCCATTTGCATC 2180 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || || || || ||||| || ||||||||||| ||||| ||||| Sbjct 2179 CCAAATTTTCACACCTTTCTCCGACAGCTCTTTGGAATTTGTTGACCC 2132 >seq964 Length=218097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||| |||||||| || | || ||||||| | |||| ||||| ||| ||| || || || Sbjct 196612 CTCTCTGCTGAGAACAATATTGATCCTGTTTTTCAGGGGTCTGTTCCGTTCTGGAATTGA 196553 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| | |||||| ||||| ||||||||||| ||| Sbjct 196552 GAACCACGTCTTCCGACCCATAATCACGACGTTCTGCTTACCT 196510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406121869429004