Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1686 158 2e-33 seq487837 122 2e-22 seq24 98.7 2e-15 seq90 95.1 2e-14 >seq1686 Length=76845 Score = 158 bits (174), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 82586 TCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG 82645 |||||| | |||||| || | ||| || || ||||||||||| || || || || || || Sbjct 57382 TCCTCTAAGACGCAGGACCAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCGGACAG 57441 Query 82646 AATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 | | | || ||||| || ||||| ||||| ||||| || || || || || ||||| || Sbjct 57442 AGTACGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAAT 57501 Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 |||||||| || || ||||| || || ||||| ||||| || ||| | || || || || Sbjct 57502 GCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTC 57561 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| |||| || || ||||| |||||||| Sbjct 57562 CAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 57606 >seq487837 Length=248 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || |||||||| || || || ||||| || || || || || || | | || Sbjct 245 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 186 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || || || || ||||| || || |||||||| Sbjct 185 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 126 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || ||| | ||||| || || | || || || |||| || || Sbjct 125 TCCTGGATCTTGGCCTTTTC----TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 70 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | ||||| || || |||||||| Sbjct 69 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 35 >seq24 Length=996480 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 60148 AGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCAT 60207 |||||| |||||||||||| | ||||| ||| | || ||| |||| || ||||| ||||| Sbjct 407064 AGCATTGTGGTGGTACTATGTGTCTAAGGGTGTGGAGTACCTAGACACAGTGTTCTTCAT 407123 Query 60208 ACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTT 60267 || | || |||||||| ||||| || || || || || || || || | || ||||| Sbjct 407124 CCTGCGTAAGAAGTTTAACCAGGTCAGCTTCTTGCATGTCTACCACCACTGCACCATGTT 407183 Query 60268 TACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || | | ||| | ||||| || ||| | || ||||| || Sbjct 407184 CACCCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 407225 >seq90 Length=1540152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||||||||| |||||||| || ||||| || || || || | ||||| || || Sbjct 1345696 CCTTCCTTATCTTGGATCTTTGCCTTCACATTCTCGATGGTGTCGCTGGGTTCCACCTCG 1345755 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 | || || || || ||||||||||| || |||||||||||||| || ||| Sbjct 1345756 AGGGTGATGGTTTTCCCTGTCAACGTTTTCACAAATATCTGCATCTTTGTAT 1345807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 975522928049172