Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1686 140 3e-28 seq487837 138 1e-27 seq422119 122 8e-23 seq232609 105 6e-18 seq208733 87.8 2e-12 >seq1686 Length=76845 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||| ||| || || | | | || || ||||| |||| Sbjct 57409 GGTTGATTCTTTCTGAATGTTGTAGTCGGACAGAGTACGGCCA-TCTTCCAGCTGTTTGC 57467 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| ||||| |||||||||||||| |||||| || Sbjct 57468 CAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 57527 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 57528 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 57587 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 57588 TTTTCACAAAGATCTGCAT 57606 >seq487837 Length=248 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| | | | || || || Sbjct 236 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAG 178 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| ||||||||| || || |||||||||||||| ||| Sbjct 177 CTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT 118 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | ||||| |||||| |||||||||| || | ||||| ||| ||||| Sbjct 117 CTTGGCCTT----TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 62 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 61 TGTGAGGGTCTTGACGAAGATCTGCATG 34 >seq422119 Length=456 Score = 122 bits (134), Expect = 8e-23 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||||||||| |||||| |||||||| ||||| ||||| ||||| || | Sbjct 129 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 188 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| |||||| |||||||||||||||||||| || ||| || ||| ||||| Sbjct 189 TGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCG 248 >seq232609 Length=862 Score = 105 bits (116), Expect = 6e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 148514 GTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGT 148573 ||| || |||||| | |||||||| |||||||| ||||| || ||| ||||||| || || Sbjct 347 GTAGGGCCCGTGCTCGGCCGCCAGGTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGT 288 Query 148574 CTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCG 148633 |||| || || |||||||||||| ||| | ||| ||| | || | |||| | | Sbjct 287 CTCGAAGATCTGGCTGTTGAGCAGCTGGGCCTCCGGGCTCTCGAAGGGGAAGCGCATCAG 228 Query 148634 CACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTG 148681 | || |||||||| |||||||| || || | || || |||| ||| Sbjct 227 GATGAAGGCGTCGGCCAGGCCCTGCACCCCAATCCCGATCGGCCTGTG 180 >seq208733 Length=363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 148264 CCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAA 148323 ||||||| ||||| |||| ||||||||| || |||| ||| || || | || || | Sbjct 30 CCACCTGGAACTCTCCGGAGAGCACGCGGCGGGTGTACAGGTTACTGGTGTAGGGCTCCA 89 Query 148324 ACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCA 148383 |||||||||||||||| ||||| ||||| | |||||||||||| || | ||||| Sbjct 90 TGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCA 149 Query 148384 G 148384 | Sbjct 150 G 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480392482911520