Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10365 111 2e-19 seq279539 102 9e-17 seq19981 102 9e-17 seq422119 87.8 2e-12 seq1736 87.8 2e-12 seq232609 86.0 7e-12 >seq10365 Length=12387 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| |||| |||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 695 AGCTGTTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAG 636 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||||| | ||||||||| | ||||||| |||||| Sbjct 635 CAGTGCGCCCTCATCTCCAAATCCGCCGGGGGCATCGGG 597 Score = 105 bits (116), Expect = 7e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||||| | ||||||||| | ||||||| ||| ||||| |||||||||||| Sbjct 598 CCGATGCCCCCGGCGGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCGTAGATGCCC 657 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| || | |||||| ||||| Sbjct 658 TCGATGCTGTCGTCCTTCATGGCCAGCAGGAAACAGCT 695 >seq279539 Length=228 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 79370 TCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAAC 79429 |||| ||| ||| |||||||||||| |||||||| ||||| |||||||||||| | Sbjct 59 TCTCCACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCCC 118 Query 79430 GCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCC 79489 || |||||| | ||| |||| |||||| || || || | |||||| ||||| Sbjct 119 GCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCC 178 Query 79490 ACGGCTCCAGATAGATGGCGAACG 79513 | |||||||| || |||||||||| Sbjct 179 AGGGCTCCAGGTACATGGCGAACG 202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 19491 CGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCC 19550 |||||||||| ||||| ||||| |||||| ||| || | || ||||| || ||| Sbjct 202 CGTTCGCCATGTACCTGGAGCCCTGGCACTTTGACATCTTCGAGTTCCTGGAGCTGAAGA 143 Query 19551 TGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGG 19610 |||| ||| | |||||| ||| ||||||||||||| ||| | ||||| || | Sbjct 142 AGAACACGGGGAAGGAGGAGCAGCGGGCTCGCGACCTCTTCTACGCCCTCTGGATCCCCG 83 Query 19611 ACCTATTCATGGAGAAGGTTGAGA 19634 |||| |||||| ||| ||| |||| Sbjct 82 ACCTCTTCATGAAGAGGGTGGAGA 59 >seq19981 Length=13813 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| ||||| ||||| || ||||| || || |||||||| || || || ||| Sbjct 3650 GTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCCGCCATCTTCTGGCTGAAGAAACGAGGC 3709 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||||||||||| |||||||||||||| || ||| ||||||| Sbjct 3710 CTCATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCCGAGACGAGG 3758 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | ||||| ||||||| ||||||| |||||| |||| |||||||||||||||||| Sbjct 9684 GTGGAGAACCCCTTCGACTTCATGGAGAACATCTCCCTGGAGGGGAAGACCAACTTCTTT 9743 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| || ||||| || Sbjct 9744 GAGAAGCGTGTGGGGGAGTA 9763 >seq422119 Length=456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 115 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 174 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||||||||| ||| |||||||||||||| |||||| ||||| || Sbjct 175 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCC 234 Query 79200 GGTCTC 79205 ||||| Sbjct 235 CGTCTC 240 >seq1736 Length=128588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || |||||||||||||||||||| ||||| | | || |||||| Sbjct 22387 TAGCCTTTGC-TGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 22329 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 | || ||| | || || ||||| || || | ||||||||||||||||| Sbjct 22328 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGAT 22279 >seq232609 Length=862 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 ||| |||| | | ||| ||||||||| ||| || || |||||||||||||||| ||||| Sbjct 167 GTCCAATAAGAGGCACAGGCCGATCGGGATTGGGGTGCAGGGCCTGGCCGACGCCTTCAT 226 Query 20140 GATGCTCGGCCTCTCATTCGACGATCCC-AAGGCGCGCGAGCTCAACAAGGGCATCTTCG 20198 || | || || | ||||| || ||| |||| | |||||||| ||||||| Sbjct 227 CCTGATGCGCTTCCCCTTCGA-GAGCCCGGAGGCCCAGCTGCTCAACAGCCAGATCTTCG 285 Query 20199 AGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 || || | ||| |||| ||||| || ||||| || || ||| |||| || | Sbjct 286 AGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGACCTGGCGGCCGAGCACGGGCCCT 345 Query 20259 ACGAGACGTTCAAGGGGTCGCCCG 20282 ||||||| | ||| ||||||| Sbjct 346 ACGAGACCTATGCGGGCTCGCCCG 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545088648669120