Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1686 156 5e-33 seq487837 140 4e-28 seq1736 89.7 6e-13 seq422119 87.8 2e-12 seq10208 86.0 7e-12 >seq1686 Length=76845 Score = 156 bits (172), Expect = 5e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || || ||||| ||| | || Sbjct 57606 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 57547 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 57546 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 57487 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| || || || || |||| ||||| || | ||||| || Sbjct 57486 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 57427 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 | || || ||||| || ||||| || ||| |||||||| Sbjct 57426 ATTCAGAAAGAATCAACCCTTCACCTGGTCCTGCGTCTT 57388 >seq487837 Length=248 Score = 140 bits (154), Expect = 4e-28 Identities = 153/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | | Sbjct 35 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 94 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||| || || ||||||||||| || ||||| ||||||||| Sbjct 95 GACACCATTGAGAA----AAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 150 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 151 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 210 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||| || || Sbjct 211 ATCCAGAAGGAGTCCACCCTGCA 233 >seq1736 Length=128588 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| || |||||||| ||||| |||||||| || ||| || |||||| | Sbjct 22386 AGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGGTT 22327 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| |||| |||||||| ||||| |||| || |||||||||||| Sbjct 22326 GAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATC 22278 >seq422119 Length=456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| || |||| || || |||||||| | |||||| Sbjct 132 ACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGC 191 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 |||| |||||| ||||||||||| |||||| || || || ||||| ||| |||| Sbjct 192 TCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACT 251 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACC 81105 || || |||| ||| | || | ||||| |||||| Sbjct 252 CGATGACCGCGTACCACACCTGCTGGGCCTTCACCACC 289 >seq10208 Length=12663 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||||| || ||||||||||| || || ||| | ||| | || ||||| Sbjct 11605 ACCATCGTGAACCTGGCACAGAACTTTGTGGGCAGCAACAACGTCAACATCCTGCAGCCA 11664 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || ||||| || ||||| || ||| ||||| |||||||| ||| |||||||||| Sbjct 11665 CTCGGCCAGTTCGGCACCCGCATCAACGGGGGCAAAGATGCTGCCAGCCCCCGTTACATT 11724 Query 32245 TTCAC 32249 ||||| Sbjct 11725 TTCAC 11729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566737776045760