Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11470 149 6e-31 seq14568 118 1e-21 seq1314 118 1e-21 seq7729 91.5 2e-13 seq896 91.5 2e-13 >seq11470 Length=16648 Score = 149 bits (164), Expect = 6e-31 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 14017 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 14076 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||||||||| ||| | ||||| Sbjct 14077 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCA 14135 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 14136 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 14195 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| ||||| Sbjct 14196 CATCCAGAAGGAGTCCACCCTGCA 14219 >seq14568 Length=18141 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 |||| ||||| || ||||||||||| || |||||| || || |||||| ||| | Sbjct 6707 AGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAGCCACCTGCGGCAGCGCCCGTCAG 6648 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 |||||| || | |||| | ||| ||||| || |||||||||||| ||||| |||| Sbjct 6647 AGGCGCGGGTGAAGGAGGTGATCATGGACGCCGTGGCCATCGAGCAGGAGTTCCTGACCG 6588 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344 |||||||| || | ||| | || | || |||| ||| | |||||| ||| Sbjct 6587 GGGCGCTGCCCGTCAGCCTGATCGGGATGAACTGCGCGCTCATGAAGAGCTACATCCAGT 6528 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 | || |||||| | |||||||||||||||| Sbjct 6527 TTGTGGCCGACCGCCTGCTGCTCGAGCTGG 6498 Score = 118 bits (130), Expect = 1e-21 Identities = 101/122 (83%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||| |||||||||||||||| | ||| | |||||| | |||| | | |||||| Sbjct 8337 AGGTTGACCTGTCCAAGGACATGCAGC-ATTGGGAGGGTCTGAAGCAGGAGGAGCGCTTC 8279 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 8278 TTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 8219 Query 116804 GT 116805 || Sbjct 8218 GT 8217 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| || || || || |||| || || || || || Sbjct 7149 GGTGAGCGTGTGGTGGCATTCGCAGCTGTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCT 7090 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct 7089 GCCATCTTCTGGCTGAAGAAACGAGGCCTCATGCCGGGCCTGACCTTCTCCAACGAGCTC 7030 Query 117152 ATCTCCAGGGACGAGG 117167 ||| | | ||||||| Sbjct 7029 ATCAGCCGAGACGAGG 7014 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| |||||||||||||| | || || || || |||||||| || || Sbjct 7899 GGTGGAGCGCTTCAGCAAGGAGGTGCAGGTGACGGAAGCCCGCTGTTTCTACGGTTTCCA 7840 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 7839 GATCGCCATGGAGAACATACACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 7785 >seq1314 Length=105107 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||| ||| | || || || ||| Sbjct 44517 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 44458 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | |||||| Sbjct 44457 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44398 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| |||||||||| Sbjct 44397 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 44338 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || || |||| Sbjct 44337 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCG 44303 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 44061 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44002 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | |||||| Sbjct 44001 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 43942 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| |||||||||| Sbjct 43941 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 43882 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || || |||| Sbjct 43881 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCG 43847 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 44289 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44230 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | |||||| Sbjct 44229 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44170 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| |||||||||| Sbjct 44169 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 44110 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || || |||| Sbjct 44109 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCG 44075 >seq7729 Length=25563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || |||||||| |||||||| | || ||||| || ||||| || || ||||| ||| Sbjct 13520 GAACCGCTGCTTAAAGAGAACCCAAGGCGCTTCGTCATCTTCCCAATCCAGTACCCTGAC 13579 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 |||||| ||||||||| | || |||| || ||||||||||| |||||||| Sbjct 13580 ATGTGGAAGATGTACAAACAAGCACAGGCCTCCTTCTGGACCGTAGAGGAGGT 13632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || |||||||| |||||||| | || ||||| || ||||| || || ||||| ||| Sbjct 14098 GAACCGCTGCTTAAAGAGAACCCAAGGCGCTTCGTCATCTTCCCAATCCAGTACCCTGAC 14157 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 |||||| ||||||||| | || |||| || ||||||||||| |||||||| Sbjct 14158 ATGTGGAAGATGTACAAACAAGCACAGGCCTCCTTCTGGACCGTAGAGGAGGT 14210 >seq896 Length=134646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||| | | || || |||||||| ||||| ||||| ||||| |||||| ||| Sbjct 22494 GAGCCACTGTTAAGAGACAATCCCCGCCGTTTCGTCATTTTTCCCATCAAATACCATGAC 22435 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||||||||| || ||||| || |||||||| | || ||||| Sbjct 22434 ATCTGGCAAATGTACAAAAAAGCTGAGGCTTCTTTCTGGACTGCTGAAGAGGT 22382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513134236702400