Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1314 129 5e-25 seq11470 122 7e-23 >seq1314 Length=105107 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 43853 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 43912 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| || ||| ||||| ||||| | || ||||||||| Sbjct 43913 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 43972 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 43973 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 44032 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 44033 CCAGTCAGGGTCTTCACAAAGATCTGCAT 44061 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 44081 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 44140 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| || ||| ||||| ||||| | || ||||||||| Sbjct 44141 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 44200 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 44201 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 44260 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 44261 CCAGTCAGGGTCTTCACAAAGATCTGCAT 44289 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 44309 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 44368 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| || ||| ||||| ||||| | || ||||||||| Sbjct 44369 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 44428 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| |||||| |||||| Sbjct 44429 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 44488 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| ||||| |||||| Sbjct 44489 CCAGTCAGGGTTTTCACGAAGATCTGCATG 44518 >seq11470 Length=16648 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45131 AAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGT 45190 |||||||| ||| ||||||||| |||||||||||| ||| ||| | || ||||| Sbjct 14222 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 14163 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 || || ||||| || |||| || ||| ||||| || || | ||||| |||||| || Sbjct 14162 TGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATC 14103 Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 || ||| || | | | | |||| | ||||||||||| ||| || |||||||| Sbjct 14102 TTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCT 14043 Query 45311 GTCAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||| || ||||| |||||| Sbjct 14042 GTGAGGGTCTTGACGAAGATCTGCATG 14016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393516398698540