Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5979 136 4e-27 seq1314 86.0 6e-12 seq18799 82.4 7e-11 >seq5979 Length=32993 Score = 136 bits (150), Expect = 4e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 23043 CGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 || |||||||||| ||| |||||||| || || ||||| || || ||||| ||||| | Sbjct 3652 CGCCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGA 3593 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 | ||||||| || ||||||||| || || ||||| | |||||||| |||||||| | Sbjct 3592 TGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGG 3533 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGA 23192 ||||||||||||| |||||||||||||| Sbjct 3532 GCGTGCCCGTCTCCGTCTGCGACTCGATGA 3503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || ||||| ||| | ||||| || || | ||||| || ||||| ||||||||||||||| Sbjct 1398 CCGATGCCCCCGGCGGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCGTAGATGCCC 1339 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 ||||||||||| || || | || | || |||||| Sbjct 1338 TCGATGCTGTCGTCCTTCATGGCCAGCAGGAAACA 1304 >seq1314 Length=105107 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 44061 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44002 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 44001 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 43942 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| || || ||| || ||| Sbjct 43941 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 43882 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || ||||| || Sbjct 43881 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCT 43850 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 44289 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44230 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 44229 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44170 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| || || ||| || ||| Sbjct 44169 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 44110 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || ||||| || Sbjct 44109 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCT 44078 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || ||||| ||||| || || ||| | || || || || Sbjct 44518 CATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCCAG 44459 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || ||||| Sbjct 44458 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 44399 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| || ||| ||||||| || || ||| || || Sbjct 44398 GCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 44339 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 44338 CATCCAGAAGGAGTCAACTCTCCACCTGGTCCT 44306 >seq18799 Length=8091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || ||||| ||| | ||||| || || | ||||| || ||||| ||||||||||||||| Sbjct 618 CCGATGCCCCCGGCGGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCGTAGATGCCC 677 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 ||||||||||| || || | || | || |||||| Sbjct 678 TCGATGCTGTCGTCCTTCATGGCCAGCAGGAAACA 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443962494820800