Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5979 114 3e-20 seq246 86.0 2e-11 >seq5979 Length=32993 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||| |||| || ||||||| ||||| || || ||||| ||| Sbjct 3481 GCCCAGCAGCTGTGGTACGCCGTCATCGAGTCGCAGACGGAGACGGGCACGCCCTACATG 3540 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||| || | |||||||||||| |||||||||| |||| || || || || Sbjct 3541 CTGTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 3600 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || |||||||| | || |||||| Sbjct 3601 AGCAACCTGTGCACCGAGATCGTGGAGTACACC 3633 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || |||||||||||||| || || || |||||||| || |||||||||| | | || || Sbjct 5600 GCCCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATGGAGCCC 5659 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | || ||||| || || | ||||| || ||||||||||| || | ||| Sbjct 5660 TACACCAGCAACCTGTACACCCGCCGCGTGCTTTCCGGAGAGTTCCAGGT 5709 >seq246 Length=269734 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||| | || || || | | ||| ||| ||||||||||||| ||||||||| ||| Sbjct 47529 ACAAATTCCAAAGAGCTGTCGGAGAAAGGTGTGAAAATTTGGGATGCAAATGGATCCCGT 47470 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 || ||| | || ||| || ||| || ||||| || | || || |||||| Sbjct 47469 GATTTTTTGGACAAGAGTGGATTTACTAACAGGGAGGAAGGGGACTTGGGCCCTGTTTAC 47410 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || ||| | ||||||||||| || |||||| ||||||| Sbjct 47409 GGTTTCCAGTGGAGACACTTTGGTGCTGAATACAAAGACATGCAC 47365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297947395164680