Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18009 131 1e-25 seq1074 100 2e-16 seq1314 82.4 5e-11 seq469 82.4 5e-11 >seq18009 Length=8709 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1313 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1372 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1373 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1407 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 3951 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 4010 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4011 GCCGGTATTTAGCCTTA 4027 >seq1074 Length=118718 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || || || || || || ||||| ||||||||| ||| || || |||| ||| || Sbjct 10194 TTTGGATGTGAGCTGGGTGCCCAGACTCAGTTTGATTCCAAGAATGACCGCTACATTGTC 10253 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || || | | ||||||||||||| | || ||||| || || | || ||| Sbjct 10254 AACGGGTCACACGAGGCAAACAAGCTGCAGGACATGCTGGACGGATTCATCAGGAAATTT 10313 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 |||||||||| ||||||||||| || || || || || Sbjct 10314 GTGCTGTGTCCCGAATGCGATAATCCAGAAACTGACCT 10351 >seq1314 Length=105107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | ||||| |||| || ||||| |||||| || || ||||| || ||| Sbjct 44291 CCTCCTCTAAGACGCAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 44350 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||| ||||| || || | || || || | || Sbjct 44351 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 44410 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||| ||||||| | || || | || || Sbjct 44411 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 44470 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || || || |||| |||||||||||| ||||||||| Sbjct 44471 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCATG 44518 >seq469 Length=376509 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || || || || ||||| ||||||||| ||| || || Sbjct 223705 CCCACCAAGTTTTTTGGCTGTGAGCTGGGTGCCCAGACCCAGTTTGATGCCAAGAATGAC 223646 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| || | | ||| ||||||||| | || || || || Sbjct 223645 CGCTACATTGTCAATGGATCTCACGAGGCGAACAAACTGCAGGACATGCTGGATGGTTTC 223586 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || || || || || || || Sbjct 223585 ATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAATCCAGAAACTGACCT 223536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333625638607940