Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq50814 156 8e-33 seq5979 156 8e-33 seq14568 118 2e-21 seq896 105 1e-17 seq7729 100 5e-16 >seq50814 Length=1495 Score = 156 bits (172), Expect = 8e-33 Identities = 169/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 244317 GCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCC 244375 ||| ||||||||||||||| |||| |||||||| |||||| |||| || | | ||| Sbjct 625 GCACCCCCTTGCTGACGGGCGAGCCCGCGTAGGTCTCGTAGGGTCCGT-GCTCGGCCGCC 567 Query 244376 AGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATG 244435 |||| ||||| | || |||||||||||||||||||||||||||||| |||| | | Sbjct 566 AGCTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATCTGGCTGTTGA-G 508 Query 244436 TCGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 || |||||| || |||||||| || ||||| |||||| |||||||||| || Sbjct 507 CAGCTGGGCCTCCGGGCTCTCGAAGGGGAAGCGCATCAGGATGAAGGCGTCGGCCAGGCC 448 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||||| ||||| ||||| || ||||| ||| ||||| Sbjct 447 CTGCACCCCGATCCCGATCGGCCTGTGCAACTTATTGGA 409 >seq5979 Length=32993 Score = 156 bits (172), Expect = 8e-33 Identities = 169/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 244317 GCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCC 244375 ||| ||||||||||||||| |||| |||||||| |||||| |||| || | | ||| Sbjct 4785 GCACCCCCTTGCTGACGGGCGAGCCCGCGTAGGTCTCGTAGGGTCCGT-GCTCGGCCGCC 4727 Query 244376 AGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATG 244435 |||| ||||| | || |||||||||||||||||||||||||||||| |||| | | Sbjct 4726 AGCTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATCTGGCTGTTGA-G 4668 Query 244436 TCGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 || |||||| || |||||||| || ||||| |||||| |||||||||| || Sbjct 4667 CAGCTGGGCCTCCGGGCTCTCGAAGGGGAAGCGCATCAGGATGAAGGCGTCGGCCAGGCC 4608 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||||| ||||| ||||| || ||||| ||| ||||| Sbjct 4607 CTGCACCCCGATCCCGATCGGCCTGTGCAACTTATTGGA 4569 Score = 145 bits (160), Expect = 1e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760 || ||||||| ||| | ||||||||| || ||||||||||| ||||| |||||||||| Sbjct 3652 CGCCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGA 3593 Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820 |||||||||||| ||| || ||| |||| |||||||||||||||||| |||||| ||| Sbjct 3592 TGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGG 3533 Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880 || || ||||| ||| | ||| |||| || ||| || | | ||||| ||| Sbjct 3532 GCGTGCCCGTCTCCGTCTGCGACTCGATGACGGCGTACCACAGCTGCTGGGCCTTCACCA 3473 Query 244881 TCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 || ||||||||||| |||||| Sbjct 3472 CCCGCTTGGCCTTGCCCTCCTGCTCGTA 3445 Score = 138 bits (152), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 ||||||| ||||||||||||||||||||||||||| | |||||| || | | || |||| Sbjct 2773 ACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGATCGCGAGCCCGCTGC 2714 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||||||||| || || |||| ||| | |||||||||| Sbjct 2713 TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCCAGGGC 2654 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||| | |||| || ||||||| || Sbjct 2653 TCCAGGTACATGGCGAATGCCCCGGGCCTCT 2623 Score = 123 bits (136), Expect = 5e-23 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 ||||||| |||||||| || ||||||||||| ||| ||||||||| || ||||| | Sbjct 5711 CCACCTGGAACTCTCCGGAAAGCACGCGGCGGGTGTACAGGTTGCTGGTGTAGGGCTCCA 5652 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| |||||||||| ||||| || ||| || || |||||||| | || ||||| Sbjct 5651 TGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCA 5592 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGA 244241 | ||||||||||| ||||| |||||| Sbjct 5591 GGCTGTTCCTCACCCCGTG--TCTGGA 5567 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| ||||||||||||||||||| ||||| | | || || |||||||| |||||| Sbjct 6379 GATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCGCGGTCGGCGGCCATCTTGATGAT 6320 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTA 243966 | ||||||||| ||||| || | |||||||| Sbjct 6319 GGTCTTCTGAGAGATCTCCCACACGGTCTTGTA 6287 >seq14568 Length=18141 Score = 118 bits (130), Expect = 2e-21 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | |||||||||||||| ||||| |||||||| |||| || | Sbjct 6707 AGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTC---AGCCACCTGCGGCAGCGCCCGT 6651 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||| |||||| || | |||| ||| ||||||| |||||| |||||||||| | Sbjct 6650 CAGAGGCGCGGGTGAAGGAGGTGATCATGGACGCCGTGGCCATCGAGCAGGAGTTCCTGA 6591 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | |||||||||| |||| |||| |||||| || |||||| | ||||||| Sbjct 6590 CCGGGGCGCTGCCCGTCAGCCTGATCGGGATGAACTGCGCGCTCATGAAGAGCTACATCC 6531 Query 43009 AGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 ||| || ||||||| || ||| | || |||| ||||| Sbjct 6530 AGTTTGTGGCCGACCGCCTGCTGCTCGAGCTGGGCTTCAGC 6490 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 6144 CCCCTTCGACTTCATGGAGAACATCTCCCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 6085 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 6084 TGTGGGGGAGTACCAG 6069 >seq896 Length=134646 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || ||||||||||| || | || || |||||||||| Sbjct 20717 TGGTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCT 20658 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 || | ||| || ||| ||| |||||| || ||||| ||||| ||||| || |||||||| Sbjct 20657 GGTTGAAGAAG-AGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATCAGCAGA 20599 Query 42825 GACGAGG 42831 || |||| Sbjct 20598 GATGAGG 20592 >seq7729 Length=25563 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || |||||| | || || ||||| || |||||||| || |||| || Sbjct 16226 GGGGAGAGAATTGTGGCCTTTGCTGCGGTGGAGGGGATTTTCTTCTCTGGGTCCTTTGCA 16285 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||| | ||| ||| ||| || |||||||||||||||| ||| || || || Sbjct 16286 GCCATCTACTGGTTAAAGAAGAGAGGCCTC-ATGCCCGGACTCACCTACTCCAATGAGCT 16344 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 16345 CATCAGCAGAGATGAGG 16361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940517695342400