Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1314 147 5e-30 seq11470 123 6e-23 >seq1314 Length=105107 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | |||||| ||||||||||| |||||||| |||| ||||||||| | || || Sbjct 43840 TCTAAGACGCAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 43899 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| || ||||| || | ||||||||| ||| ||| || Sbjct 43900 GCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 43959 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || || | |||||| | | || || |||| Sbjct 43960 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAG 44019 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 44020 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 44058 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | |||||| ||||||||||| |||||||| |||| ||||||||| | || || Sbjct 44068 TCTAAGACGCAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 44127 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| || ||||| || | ||||||||| ||| ||| || Sbjct 44128 GCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 44187 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || || | |||||| | | || || |||| Sbjct 44188 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAG 44247 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 44248 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 44286 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | |||||| ||||||||||| |||||||| |||| ||||||||| | || || Sbjct 44296 TCTAAGACGCAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 44355 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| || ||||| || | ||||||||| ||| ||| || Sbjct 44356 GCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 44415 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || || | |||||| | | || || |||| Sbjct 44416 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAG 44475 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || |||||||| || || || Sbjct 44476 GGTAATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTG 44514 >seq11470 Length=16648 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || |||||||| |||| ||||||||| | || || | |||||||||||||| Sbjct 14220 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 14161 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| || | ||||||||| || ||| || ||| ||||| ||||| Sbjct 14160 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTT 14101 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| || | |||||| | | || || |||| ||||| ||||| || || Sbjct 14100 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGT 14041 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || Sbjct 14040 GAGGGTCTTGACGAAGATCTG 14020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174031528990580