Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3072 100 2e-15 seq9631 95.1 9e-14 >seq3072 Length=63529 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||||||||||||||| || |||| ||||||||| ||||| | | Sbjct 57991 CCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGCAAAACATTTAGACCTGAA 57932 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || || || || || ||||| | || ||||| || || || || || || || Sbjct 57931 ATTGTACCGGCGTCCTTGGTAGCTTGCCGCTGGGAATCATTGAAGTAAGCTGGTACCGTC 57872 Query 518297 ATAACGGC 518304 | ||| || Sbjct 57871 ACAACAGC 57864 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||||||||||||||| || |||| || |||||| ||||| | | Sbjct 39692 CCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGCAGAACATTTAGACCTGAA 39751 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || || || || || ||||| | || ||||| || || || || || || || Sbjct 39752 ATTGTACCGGCGTCCTTGGTAGCTTGCCGCTGGGAATCATTGAAGTAAGCTGGTACCGTC 39811 Query 518297 ATAACGGC 518304 | ||| || Sbjct 39812 ACAACAGC 39819 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || |||||| | |||| || || || ||||||||||| Sbjct 40434 CAAACACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTTGCAGCGTCTCCAATCAGCC 40493 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | || || || || || | ||||| || || || | || || ||||| || |||| Sbjct 40494 GCTCAGTATCGGTGAAAGCTACATAGCTGGGTGTGGTCCTGTTTCCCTGATCGTTGGCAA 40553 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || |||||||| |||| || | |||||||| || | ||||| || | ||||| Sbjct 40554 TGATCTCAACTTTGCCATGCTGGAAGACACCTACGCAGGAGTAGGTTGTCCCCAGATCAA 40613 Query 518703 TACCAA 518708 |||||| Sbjct 40614 TACCAA 40619 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || |||||| | |||| || || || ||||||||||| Sbjct 57059 CAAACACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTTGCAGCGTCTCCAATCAGTC 57000 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | || | || || |||| ||||| || || || | || || ||||| || |||| Sbjct 56999 GCTCACTATCGGTGAATGCTACATAGCTGGGTGTGGTCCTGTTTCCCTGATCGTTGGCAA 56940 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || |||||||| |||| || | |||||||| || | ||||| || | ||||| Sbjct 56939 TGATCTCAACTTTGCCATGCTGGAAGACACCTACGCAGGAGTAGGTTGTCCCCAGATCAA 56880 Query 518703 TACCAA 518708 |||||| Sbjct 56879 TACCAA 56874 >seq9631 Length=20267 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||| || || || |||||||| | ||| Sbjct 19761 TTTTTGTCCAAGCCATAGGCAATGGCAGCAGCAGTGGGCTCGTTTATAATTCTTAGTACA 19702 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | || ||||| || || ||||| | || |||||||| || || Sbjct 19701 TTTAGCCCAGAAATGGTCCCGGCATCCTTTGTAGCTTGCCGCTGAGAATCGTTGAAGTAA 19642 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | ||| |||| Sbjct 19641 GCTGGTACAGTTACAACAGCAT 19620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3764757354800440