Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1314 176 5e-39 seq11470 150 2e-31 seq5979 91.5 2e-13 seq3181 91.5 2e-13 seq896 89.7 6e-13 >seq1314 Length=105107 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 44061 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44002 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 44001 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 43942 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 43941 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 43882 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||||||| | || || Sbjct 43881 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCGTCTTAGAGGAGG 43835 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 44289 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 44230 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 44229 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44170 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 44169 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 44110 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||||||| | || || Sbjct 44109 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCGTCTTAGAGGAGG 44063 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| ||||| || ||||| ||| | || Sbjct 44517 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 44458 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 44457 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44398 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 44397 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 44338 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||||||| | || || Sbjct 44337 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCGTCTTAGAGGAGG 44291 >seq11470 Length=16648 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | | Sbjct 14017 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 14076 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||| ||||| ||||| ||||||||| Sbjct 14077 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAG 14136 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 14137 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 14196 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||| || || Sbjct 14197 ATCCAGAAGGAGTCCACCCTGCA 14219 Score = 123 bits (136), Expect = 3e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || ||||||||||| || || ||||| ||| | | Sbjct 13568 AATGCAGATCTTTGTCAAGACACTGACTGGCAAGACTATCACCCTGGAGGTGGAGCCCAG 13627 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || ||||||| || || |||||||| ||||| ||||| |||||||| Sbjct 13628 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCA 13687 Query 27525 GCAGCGTCTAATTTTTGC 27542 |||| | || || ||||| Sbjct 13688 GCAGAGGCTGATCTTTGC 13705 >seq5979 Length=32993 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| || |||| || || |||||||| | |||||| Sbjct 3628 ACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGC 3569 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 |||| |||||| ||||||||||| |||||| || || || ||||| ||| |||| Sbjct 3568 TCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACT 3509 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACC 81105 || || ||||| ||| | || | ||||| |||||| Sbjct 3508 CGATGACGGCGTACCACAGCTGCTGGGCCTTCACCACC 3471 >seq3181 Length=56741 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||||| || ||||||||||| || || ||| | ||| | || ||||| Sbjct 26692 ACCATCGTGAACCTGGCGCAGAACTTTGTGGGCAGCAACAACATCAACATCCTGCAGCCA 26633 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| ||||| || ||| ||||| |||||||| ||| |||||||||| Sbjct 26632 CTCGGCCAGTTTGGCACCCGCATCAACGGGGGCAAAGATGCTGCCAGCCCCCGTTACATT 26573 Query 32245 TTCAC 32249 ||||| Sbjct 26572 TTCAC 26568 >seq896 Length=134646 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| || |||||||| ||||| |||||||| || ||| || |||||| | Sbjct 20713 AGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGGTT 20654 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| |||| |||||||| ||||| |||| || |||||||||||| Sbjct 20653 GAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATC 20605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568002496388800