Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1314 125 2e-23 seq11470 96.9 8e-15 >seq1314 Length=105107 Score = 125 bits (138), Expect = 2e-23 Identities = 160/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 44306 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 44365 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| |||||||||||||| | | || |||||||| | Sbjct 44366 TCCAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGT 44423 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || || |||||| |||| | | |||| ||| ||| || || || |||| Sbjct 44424 CCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTAA 44480 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || || |||||||||| |||||| Sbjct 44481 TGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 44517 Score = 122 bits (134), Expect = 2e-22 Identities = 159/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 43850 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 43909 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| |||||||||||||| | | || |||||||| | Sbjct 43910 TCCAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGT 43967 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || || |||||| |||| | | |||| ||| ||| || || || || | Sbjct 43968 CCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGA 44024 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || |||||||| |||| |||||| Sbjct 44025 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 44061 Score = 122 bits (134), Expect = 2e-22 Identities = 159/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 44078 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 44137 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| |||||||||||||| | | || |||||||| | Sbjct 44138 TCCAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGT 44195 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || || |||||| |||| | | |||| ||| ||| || || || || | Sbjct 44196 CCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGA 44252 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || |||||||| |||| |||||| Sbjct 44253 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 44289 >seq11470 Length=16648 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| || ||||||||||| |||| | || | |||||||| || Sbjct 14219 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 14160 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| |||||||||||||| | | || || || || || || || || Sbjct 14159 TTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTG 14100 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | | |||| ||| || || || || || || ||||| ||| Sbjct 14099 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTG 14040 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 14039 AGGGTCTTGACGAAGATCTGCAT 14017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149034845069540