Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18]
323,740 sequences; 1,151,137,423 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1314 145 2e-29
seq11470 143 6e-29
seq2812 93.3 1e-13
seq313 87.8 4e-12
>seq1314
Length=105107
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || ||||||||||| || || || || || || ||||| ||||||| ||| || |
Sbjct 44514 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTGG--AGCCCAGTG 44457
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| ||||| || ||||| |||||||
Sbjct 44456 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGC 44397
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || ||||| ||||| |||||||| | || || |||| || |||
Sbjct 44396 AGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 44337
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || ||||| || || || || || | || |||
Sbjct 44336 TCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCGTCTTAGA 44296
>seq11470
Length=16648
Score = 143 bits (158), Expect = 6e-29
Identities = 154/202 (76%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| || || |||||||| || || |||||||| |||||||| || |||
Sbjct 14020 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 14077
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||| || ||||| ||||||||||| || || || || |||||||
Sbjct 14078 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 14137
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| || ||||| |||||||| | || || |||| || |||
Sbjct 14138 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 14197
Query 178102 TCCAAAAAGAATCAACACTGCA 178123
|||| || || || || |||||
Sbjct 14198 TCCAGAAGGAGTCCACCCTGCA 14219
Score = 87.8 bits (96), Expect = 4e-12
Identities = 108/145 (74%), Gaps = 7/145 (5%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || || || || || || || || || |||||||| ||||||||
Sbjct 13566 AAAATGC---AGATCTTTGTCAAGACACTGACTGGCAAGACTATCACCCTGGAGGTGGA- 13621
Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||| ||||||| |||||||| || ||||| ||||||||||| || || || |
Sbjct 13622 -GCCCAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCC 13680
Query 178033 CGGACCAGCAACGACTTATCTTCGC 178057
| |||||||| | || ||||| ||
Sbjct 13681 CAGACCAGCAGAGGCTGATCTTTGC 13705
>seq2812
Length=62591
Score = 93.3 bits (102), Expect = 1e-13
Identities = 85/106 (80%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| | ||||||||||| |||||||||||||||||| | |||
Sbjct 32147 CAGATCTTCGTGAAAACCTTGACAGGAAAAACCATCACCCTCGAGGTGGAACCCAGTGAC 32206
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATC 178028
||||||||||| || || ||||| ||||| || ||||| ||||
Sbjct 32207 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTAATC 32252
>seq313
Length=533116
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | ||||| ||||| |||||||||||||||||| | |||
Sbjct 79982 CAGATATTTGTGAAAACGTTGACAGGGAAAACCATCACCCTCGAGGTGGAACCCAGCGAC 79923
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
||||||||||| || || ||||||||| || || |||||
Sbjct 79922 ACCATCGAGAATGTGAAGGCAAAGATTCAAGATAAGGAAGG 79882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1198738220785560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |