Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20japonica_20[genbank_20GCA_5F000470695.1_202014-03-18] 323,740 sequences; 1,151,137,423 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1314 145 2e-29 seq11470 143 6e-29 seq2812 93.3 1e-13 seq313 87.8 4e-12 >seq1314 Length=105107 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || || || || ||||| ||||||| ||| || | Sbjct 44514 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTGG--AGCCCAGTG 44457 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 44456 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGC 44397 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || ||||| ||||| |||||||| | || || |||| || ||| Sbjct 44396 AGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 44337 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || ||||| || || || || || | || ||| Sbjct 44336 TCCAGAAGGAGTCAACTCTCCACCTGGTCCTGCGTCTTAGA 44296 >seq11470 Length=16648 Score = 143 bits (158), Expect = 6e-29 Identities = 154/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| || || |||||||| |||||||| || ||| Sbjct 14020 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 14077 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 14078 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 14137 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 14138 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 14197 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| || || || || ||||| Sbjct 14198 TCCAGAAGGAGTCCACCCTGCA 14219 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/145 (74%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || || || || || || || |||||||| |||||||| Sbjct 13566 AAAATGC---AGATCTTTGTCAAGACACTGACTGGCAAGACTATCACCCTGGAGGTGGA- 13621 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| |||||||| || ||||| ||||||||||| || || || | Sbjct 13622 -GCCCAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCC 13680 Query 178033 CGGACCAGCAACGACTTATCTTCGC 178057 | |||||||| | || ||||| || Sbjct 13681 CAGACCAGCAGAGGCTGATCTTTGC 13705 >seq2812 Length=62591 Score = 93.3 bits (102), Expect = 1e-13 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | ||||||||||| |||||||||||||||||| | ||| Sbjct 32147 CAGATCTTCGTGAAAACCTTGACAGGAAAAACCATCACCCTCGAGGTGGAACCCAGTGAC 32206 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATC 178028 ||||||||||| || || ||||| ||||| || ||||| |||| Sbjct 32207 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTAATC 32252 >seq313 Length=533116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | ||||| ||||| |||||||||||||||||| | ||| Sbjct 79982 CAGATATTTGTGAAAACGTTGACAGGGAAAACCATCACCCTCGAGGTGGAACCCAGCGAC 79923 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || ||||||||| || || ||||| Sbjct 79922 ACCATCGAGAATGTGAAGGCAAAGATTCAAGATAAGGAAGG 79882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198738220785560