Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1021 306 3e-78 seq6876 114 9e-21 >seq1021 Length=130879 Score = 306 bits (338), Expect = 3e-78 Identities = 592/867 (68%), Gaps = 14/867 (2%) Strand=Plus/Minus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 || ||| | || |||||||| || ||||| ||||||||||| ||||| || || | || Sbjct 53667 GAGGAGATGGAGTTCCCCATCGCGTACTCCATGGTGGTCCACGAGAAAATCGAGATGTTC 53608 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || |||| ||||| || | || | || || ||| | ||||| || |||||||| Sbjct 53607 GAGAGGCTCCTGCGGGCTATATACGTGCCCCACAACGTGTACTGCGTGCACGTGGACCGC 53548 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||||||| | |||| || ||| ||| ||| | |||||| | ||||| || Sbjct 53547 AAGTCCCCAGAGGCCTTCAGGCTTGCCGTCCAGGGCATCGTCTCCTGCCTGCCCAACGTG 53488 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || ||||||| | | ||| ||| | || || ||||||||| | |||||||| ||| Sbjct 53487 TTTGTGGCCAGCAGGCTGGAGAGCGTGATATACGCGTCCTGGTCCCGGGTGCAAGCGGAC 53428 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||||| ||| | | || | || | |||| |||| | || || || Sbjct 53427 CTCAACTGCATGGAGGACCTCATGAAGTCGCCGGTCCGGTGGAGGTACCTGCTCAACACC 53368 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 ||||| || ||||||||||| || || || || ||||| || | || ||||| | | Sbjct 53367 TGCGGCACCGACTTCCCCATCAAAACGAACGCGGAGATCGTGCGAGCTCTCAAACAGCTC 53308 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119 || || | |||||| |||||||| || | | | | ||| ||| ||||||| Sbjct 53307 AACGGCAGGAACAGCATGGAGTCCGAAGAGACGAACAACTACAAGAAAGGCCGCTGGATG 53248 Query 108120 TACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCT 108179 |||||| | | ||||| || | || | || | | || |||||| |||||||| Sbjct 53247 TACCGCCACAACGTGACGCACGCCGTGATCAGGACAAACCTGAAGAAGGATCCTCCCCC- 53189 Query 108180 GATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGT--C 108236 || | ||| |||||| | ||||| ||||| || |||| | | || | ||||| Sbjct 53188 CATCAGCACCCCTATGTTCTCTGGGAACGCCTACTTCGTGGTCACCCGGGAGTTTGTGAG 53129 Query 108237 CAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTAT 108296 || ||||| || | || | | || | || |||| || || ||||| Sbjct 53128 GCACCTGTCT--GAAAGCCAGGAGGTGCGGTCCCTCATCGAGTGGGAGAAGGATACCTAC 53071 Query 108297 AGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGTGGATGCCTGGCTC 108352 ||||||||||||||||| ||||||||||| ||| | || ||||| | || ||||| Sbjct 53070 AGCCCCGACGAACACCTGTGGGCCACCCTGCAGAGAATGCCCTCCG----TCCCCGGCTC 53015 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 ||| | || |||||| || || |||||| ||||||||| | || || || Sbjct 53014 CTATCCCCCCAACAGCAAGTACCAGCAGTCGGACATGGAGGCCATCGCCCGCCTGGTGAA 52955 Query 108413 GTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAAT 108472 |||| |||| || || || || || | ||| ||||| || | |||||| | || | Sbjct 52954 GTGGAGCTACCTGGAAGGGGACGTGAGGAAGGGTGCGCCCTACCCGCCCTGCACCGGGAC 52895 Query 108473 CCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCA 108532 || || || ||| | ||| | ||||| |||||||||| ||||||| ||| | || Sbjct 52894 TCACCGAAGAGCCGTGTGCGTCTACGGCACCGGGGACCTCCACTGGATGCTCAGCCAGCA 52835 Query 108533 TCACCTCTTGGCAAACAAGTTTGACCC 108559 |||||| || || |||||||||||||| Sbjct 52834 TCACCTTTTCGCCAACAAGTTTGACCC 52808 >seq6876 Length=59938 Score = 114 bits (126), Expect = 9e-21 Identities = 297/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 107644 GAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAG 107703 ||||||| ||||| ||| || | |||| | | | |||||| ||||| || | Sbjct 28300 GAGACTGCGAGCGGTTCCGCCTCCTGCGCAAGTACGTGCCGTTCCCGCTGAGCCGCGAGG 28241 Query 107704 AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAAC 107763 || |||||||| || ||||| || |||||||| | ||||| | | ||| || Sbjct 28240 AGGCCCGGTTCCCCATCGCGTACTCCATCGTGGTCCACCACAAGATCCAGACCTTCGAGA 28181 Query 107764 GGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGT 107823 |||||||| | ||||| || || || |||||| | ||||| ||||||||||| ||| Sbjct 28180 GGCTGCTGAGGGCCGTCTACGCGCCCCAGAACCTGTACTGCGTCCACGTGGACCGCAAGG 28121 Query 107824 CCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCA 107883 | || || ||| ||| || || || ||||||||| ||| ||||||| Sbjct 28120 CGCCGTCCACCTTCCTCTCGGCCGTGCAGCAGATCGCCTCCTGCTTCGACAACGTCTTCA 28061 Query 107884 TGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGA 107943 | ||||| ||| ||||| || ||| |||| | | ||||| || ||||| | Sbjct 28060 TCGCCAGCCGCCTGGAGAGCGTGGTGTACGCCAGCTGGAGCCGGGTGCAGGCCGACCTCA 28001 Query 107944 ACTGTATGGAAGACTTGCTCCAGAGCTCAGTG--CCATGGAAGTACTTACTGAATACATG 108001 |||| |||| ||| || | || | | ||| | || |||| |||||| | || || Sbjct 28000 ACTGCATGGGCGACCTG-TACA-ACCACAGCGCCCCCTGGAGGTACTTCGTCAACCTGTG 27943 Query 108002 CGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC--CTCAAGATGTTG 108059 ||| |||||||| | |||||||| |||||||| | ||| || | | || Sbjct 27942 CGGCCAGGACTTCCCGCTGAAGACCAACCTGGAGATGGTGC--GCCAGCTGAGGGCCCTG 27885 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAG 108086 |||| |||||||| ||||| | ||| Sbjct 27884 CAGGGGAAGAACAGCCTGGAGACGGAG 27858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347932595340066