Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2553 93.3 3e-14 seq7938 91.5 1e-13 >seq2553 Length=132868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 28717 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 28658 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 28657 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28598 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | |||||| | Sbjct 28597 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTC 28538 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 ||||| |||| ||||| ||||| || |||||| | | ||| Sbjct 28537 TTGCCAGTCAGGGTTTTCACAAAGATCTGCATTGTCACACT 28497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 28945 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 28886 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 28885 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28826 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 28825 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 28766 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 28765 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 28734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 29173 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 29114 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 29113 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 29054 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 29053 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 28994 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 28993 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 28962 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 29401 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 29342 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 29341 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 29282 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 29281 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 29222 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 29221 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 29190 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 29629 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 29570 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 29569 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 29510 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 29509 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 29450 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 29449 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 29418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 29857 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 29798 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 29797 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 29738 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 29737 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 29678 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 29677 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 29646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 30629 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 30570 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 30569 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 30510 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 30509 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 30450 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 30449 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| || || | |||| Sbjct 30857 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 30798 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 30797 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 30738 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||| ||| | Sbjct 30737 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 30678 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 30677 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30646 >seq7938 Length=58116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| |||| || |||| ||| || || || || || || ||||||||||||| | Sbjct 30619 CCGCCCCTGAGTCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 30560 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || || || || || ||| Sbjct 30559 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 30500 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || || | ||| || | ||| ||||| | |||||| Sbjct 30499 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACC 30440 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | ||||| |||| ||| || ||||| || |||||||| Sbjct 30439 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATCTGCATTTT 30390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| ||| || || || || || || ||||||||||||| Sbjct 33960 TCCCCCTCGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 33901 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| |||||||||||| |||| || || || || || ||| Sbjct 33900 CAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGG 33841 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | ||| || | ||| ||||| | |||||| Sbjct 33840 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCAC 33781 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | || || || || || ||||| Sbjct 33780 CTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 33733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378977796594705