Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq36092 104 5e-17 seq8880 104 5e-17 seq1886 104 5e-17 >seq36092 Length=2431 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||||||||||||||||||||||| ||| | || || ||||| |||||| Sbjct 1272 GTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 1331 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| |||||| | ||||||||||||| | |||||| ||| Sbjct 1332 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAG 1376 >seq8880 Length=37550 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||||||||||||||||||||||| ||| | || || ||||| |||||| Sbjct 864 GTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 805 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| |||||| | ||||||||||||| | |||||| ||| Sbjct 804 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAG 760 >seq1886 Length=180247 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||||||||||||||||||||||| ||| | || || ||||| |||||| Sbjct 87461 GTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 87402 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| |||||| | ||||||||||||| | |||||| ||| Sbjct 87401 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAG 87357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988579705524595