Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq36092 98.7 9e-16 seq8880 98.7 9e-16 seq1886 98.7 9e-16 seq18171 93.3 4e-14 seq3116 93.3 4e-14 >seq36092 Length=2431 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || |||||||| || || || ||||| ||||| || || | || || Sbjct 1393 TCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCTTC 1334 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||||||| || || || || |||||||||||||| ||||| ||| Sbjct 1333 AACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGGCT 1274 Query 13295 ATCA 13298 | || Sbjct 1273 ACCA 1270 >seq8880 Length=37550 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || |||||||| || || || ||||| ||||| || || | || || Sbjct 743 TCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCTTC 802 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||||||| || || || || |||||||||||||| ||||| ||| Sbjct 803 AACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGGCT 862 Query 13295 ATCA 13298 | || Sbjct 863 ACCA 866 >seq1886 Length=180247 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || |||||||| || || || ||||| ||||| || || | || || Sbjct 87340 TCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCTTC 87399 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||||||| || || || || |||||||||||||| ||||| ||| Sbjct 87400 AACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGGCT 87459 Query 13295 ATCA 13298 | || Sbjct 87460 ACCA 87463 >seq18171 Length=35654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || |||| || || |||||||| || || || || |||||||| || |||||||| || Sbjct 27408 TCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATGAGGCCTCGTTTCTTC 27467 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || || || ||||||||||| || ||||| || ||||| || || || ||||| Sbjct 27468 AGCCAGAAGATGGCGGCAAACGAACCGGAGAAAAAGATCCCTTCCACAGCCGCGAACGC 27526 >seq3116 Length=119845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || |||| || || |||||||| || || || || |||||||| || |||||||| || Sbjct 115411 TCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATGAGGCCTCGTTTCTTC 115470 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || || || ||||||||||| || ||||| || ||||| || || || ||||| Sbjct 115471 AGCCAGAAGATGGCGGCAAACGAACCGGAGAAAAAGATCCCTTCCACAGCCGCGAACGC 115529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430566346965018