Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1461 145 1e-29 seq10270 114 2e-20 >seq1461 Length=415275 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | ||||||||| | || || || | ||||| |||||||| || ||||||| || Sbjct 58746 GCAGTGTTGACGATCTCGAATCCAACCTTCCCGCCAAAGGTGCTTGGCATCCAGTACTCC 58687 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 ||||| |||||| ||| |||| || ||||| ||||| | || || |||| || | Sbjct 58686 GGGGAACAGATGGGGTTACCCATCAGCCCTTTCAGGGAGTAAGGGGCTCCCATTTCCACC 58627 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| |||| || |||| || ||||| | |||||| |||||||||| |||| ||||| | Sbjct 58626 ATGGTCTCTCCAAAGACAGCATTGGGCCTGGGCTTCTCCACCAAGAGCCCGGGGTACAGC 58567 Query 8915 TCCACAGCCTCGATGTCTCCGTA 8937 ||||| || || ||||||||||| Sbjct 58566 TCCACTGCGTCAATGTCTCCGTA 58544 Score = 111 bits (122), Expect = 2e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || ||||||||||| || | |||||| ||| || || || Sbjct 57262 TCACCAATGAGGATGAGGCGGGTGGTCTGAAAGAGGCGCTCGTCATCCCAGTCGGGGTGC 57203 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | |||| | ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 57202 TCGCTCTTCAAGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 57143 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || |||||||| || ||||| || || || || || | || || Sbjct 57142 ATGAGGCCCGGGACCAGGCCGAAGGCCTCGTGCCCCACGGCAAGCTTGTGCTCCTCAGGG 57083 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCG-AGGGGGG 9839 || | ||| || ||| ||| | |||||| || | || |||| ||||||| Sbjct 57082 ACATGGGGTGGGTAGTGCATCTCCACCTGCACTTGCTTCACCGTAGGGGGG 57032 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||| ||||| ||||| |||| ||||||||||| || | || || | | ||| Sbjct 56272 CTTACGCCATGACCCAGGGCTTTGGTGAAGGCCGGTCCCTTCTTCATGTCGGATTTGAAA 56213 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || ||||| ||||| |||| ||||||||||| | ||| | || || ||||| Sbjct 56212 AACTGATGGGTGAAGTGTTGAGCAAAGAAGGCAAACATCATATTGCTTCCTTGAGGATCA 56153 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 ||| ||||| | ||| | || ||| ||||||| Sbjct 56152 GGAATGAAGCGCTTCCTCAACAGCAGTTTCTCCACAA 56116 >seq10270 Length=31464 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || | || || ||| || || || ||||||| Sbjct 10137 ATGAGGCGTGTGGTCTGGAAGAGGCGCTCATCGTCCCAGGTGGGGTGCTCCTGTTTCAGC 10196 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | |||||| || | |||||||| || || ||||||||||| || || Sbjct 10197 ACGTCACAGACCCGGTTGTGCTCACGAAGCCAGATGGTGGCATACATCATGAGTCCTGGG 10256 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 | ||| ||||| || || || || || || | || | ||||| || | ||||||| Sbjct 10257 ATCAGCCCAAATGCTTCATGGCCCACGGCAAAGCGGTGCTCCTCGGGGACATGGGGAGGA 10316 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTC 9854 ||| ||||| ||||||||| || || || | || ||||||| ||| || || Sbjct 10317 TAGTGCATGTCCACCTGGACCTCCTTCACTGTAGGAGGATACACTTCCCCATC 10369 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 10305 GGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTAATAGGAGAGATTGGAG 10364 || ||||| ||||| | ||| || || ||||| | | || |||||||||||| || || Sbjct 11450 GGTGTTGGGCAATCTTCAGGTACAGGCGGTAGGGTTCGTGTGTAATAGGAGAGGTTTGAA 11509 Query 10365 AAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGGAGGGCTGTCAATCAAA 10424 | |||||||||||| ||| | || || | |||||| | ||||||||||| |||||| Sbjct 11510 TACGCTTCCCAGCTTTTGTAACCATAATCTGAATTGTAGGTAGGAGGGCTGTCGATCAAA 11569 Query 10425 T 10425 | Sbjct 11570 T 11570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707823280738960