Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq36092 120 4e-22 seq8880 120 4e-22 seq1886 120 4e-22 seq1416 102 1e-16 >seq36092 Length=2431 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || |||||||| |||||||| || ||||| || || | ||| | Sbjct 1395 CCTCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCT 1336 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||||||| || || ||||| |||||||||||||| ||||||||||||| Sbjct 1335 TCAACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGG 1276 Query 33446 C 33446 | Sbjct 1275 C 1275 >seq8880 Length=37550 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || |||||||| |||||||| || ||||| || || | ||| | Sbjct 741 CCTCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCT 800 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||||||| || || ||||| |||||||||||||| ||||||||||||| Sbjct 801 TCAACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGG 860 Query 33446 C 33446 | Sbjct 861 C 861 >seq1886 Length=180247 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || |||||||| |||||||| || ||||| || || | ||| | Sbjct 87338 CCTCATCTCTGCTGATCAGCTCGTTGGAGAACGTGAGACCAGGCATCAGACCCCTCTTCT 87397 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||||||| || || ||||| |||||||||||||| ||||||||||||| Sbjct 87398 TCAACCAGAAGATGGAAGCAAACGACCCAGAGAAGAAGATTCCTTCAACTGCAGCAAAGG 87457 Query 33446 C 33446 | Sbjct 87458 C 87458 >seq1416 Length=277003 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| | |||||||||||||| ||||| | ||| | Sbjct 25456 CCTCATCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCGGGCATGAGGCCTCTCTTCT 25515 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| | |||| || || || ||||| ||||| || || || || |||||||||| Sbjct 25516 TTAACCAGTAGATGGCTGCAAAGGACCCAGAGAAGAAAATCCCCTCCACCGCAGCAAAGG 25575 Query 33446 CAATAAGTCTCTCTCC 33461 | | || ||||||||| Sbjct 25576 CCACAATTCTCTCTCC 25591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622330412190440