Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq670 131 1e-25 seq4707 107 1e-18 seq2475 105 4e-18 seq39321 93.3 3e-14 seq6581 82.4 5e-11 seq1972 82.4 5e-11 >seq670 Length=345836 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 340362 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 340303 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 340302 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 340268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 337789 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 337730 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 337729 GCCGGTATTTAGCCTTA 337713 >seq4707 Length=73663 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 755 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGGTAGGGACAGTGGGAATCTCGT 814 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 | |||| ||||||||||||||||| || Sbjct 815 TCATCCATTCATGCGCGTCACTAAATA 841 >seq2475 Length=136708 Score = 105 bits (116), Expect = 4e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || || || || || || ||||| ||||||||| ||| || || |||| ||| || Sbjct 40420 TTTGGATGTGAGCTGGGTGCCCAGACTCAGTTTGATTCCAAGAATGACCGCTACATTGTC 40361 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || || | | ||||||||||||| | || ||||| || || | || ||| Sbjct 40360 AACGGGTCACACGAGGCAAACAAGCTGCAGGACATGCTGGACGGATTCATCAGGAAATTT 40301 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 |||||||||| ||||||||||| || || ||||| || Sbjct 40300 GTGCTGTGTCCCGAATGCGATAATCCAGAAACCGACCT 40263 Score = 105 bits (116), Expect = 4e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || || || || || || ||||| ||||||||| ||| || || |||| ||| || Sbjct 51039 TTTGGATGTGAGCTGGGTGCCCAGACTCAGTTTGATTCCAAGAATGACCGCTACATTGTC 50980 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || || | | ||||||||||||| | || ||||| || || | || ||| Sbjct 50979 AACGGGTCACACGAGGCAAACAAGCTGCAGGACATGCTGGACGGATTCATCAGGAAATTT 50920 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 |||||||||| ||||||||||| || || ||||| || Sbjct 50919 GTGCTGTGTCCCGAATGCGATAATCCAGAAACCGACCT 50882 >seq39321 Length=1922 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 1793 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1734 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1733 GCCCGTATTTAGCCTT 1718 >seq6581 Length=52724 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || || || || ||||| ||||||||| ||| || || Sbjct 1324 CCCACCAAGTTTTTTGGCTGTGAGCTGGGTGCCCAGACCCAGTTTGATGCCAAGAATGAC 1265 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| || | | ||| ||||||||| | || || || || Sbjct 1264 CGCTACATTGTCAATGGATCTCACGAGGCGAACAAACTGCAGGACATGCTGGATGGTTTC 1205 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || || || || || || || Sbjct 1204 ATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAATCCAGAAACTGACCT 1155 >seq1972 Length=173698 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || || || || ||||| ||||||||| ||| || || Sbjct 2090 CCCACCAAGTTTTTTGGCTGTGAGCTGGGTGCCCAGACCCAGTTTGATGCCAAGAATGAC 2149 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| || | | ||| ||||||||| | || || || || Sbjct 2150 CGCTACATTGTCAATGGATCTCACGAGGCGAACAAACTGCAGGACATGCTGGATGGTTTC 2209 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || || || || || || || Sbjct 2210 ATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAATCCAGAAACTGACCT 2259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || || || || ||||| ||||||||| ||| || || Sbjct 7124 CCCACCAAGTTTTTTGGCTGTGAGCTGGGTGCCCAGACCCAGTTTGATGCCAAGAATGAC 7183 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| || | | ||| ||||||||| | || || || || Sbjct 7184 CGCTACATTGTCAATGGATCTCACGAGGCGAACAAACTGCAGGACATGCTGGATGGTTTC 7243 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || || || || || || || Sbjct 7244 ATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAATCCAGAAACTGACCT 7293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334623855475679