Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18090 141 2e-28 seq16166 138 2e-27 seq18171 116 7e-21 seq36092 105 1e-17 seq8880 105 1e-17 seq1886 105 1e-17 seq1416 100 5e-16 seq3116 87.8 3e-12 >seq18090 Length=13718 Score = 141 bits (156), Expect = 2e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 ||||||| ||||||||||||||||||||||||||| | ||||||||| | | || |||| Sbjct 5859 ACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCCCGCTGC 5918 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||||||||| || || |||| ||| | |||||||||| Sbjct 5919 TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCCAGGGC 5978 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||| | |||| || ||||||| || Sbjct 5979 TCCAGGTACATGGCGAACGCCCCGGGCCTCT 6009 Score = 138 bits (152), Expect = 2e-27 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| ||| | ||||||||| || ||||||||||| ||||| |||||||||||||| Sbjct 4958 CACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGT 5017 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| |||| ||||||||||||||||||||||||| ||||| Sbjct 5018 GCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGT 5077 Query 244825 CCCGGTCTC 244833 || ||||| Sbjct 5078 GCCCGTCTC 5086 Score = 136 bits (150), Expect = 7e-27 Identities = 166/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 244317 GCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG--GC 244374 ||| ||||||||||||||| |||| |||||||| |||||| || | || ||| || Sbjct 4254 GCACCCCCTTGCTGACGGGCGAGCCCGCGTAGGTCTCGTAGGGCCCAT-GCT-TGGCTGC 4311 Query 244375 CAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT 244434 ||| | ||||| | || ||||||||||||||||||||||| |||||| |||| | Sbjct 4312 CAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGCTGTTGA- 4370 Query 244435 GTCGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTC 244493 | || |||||| || |||||||| || ||| | |||||| |||||||||| | Sbjct 4371 GCAGCTGGGCCTCCGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGC 4430 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||||| ||||| ||||| || ||||| | || ||||| Sbjct 4431 CCTGCACCCCGATCCCGATCGGCCTGTGCCTTTTATTGGA 4470 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| ||||||||||||||||||| ||||| | | || || |||||||| |||||| Sbjct 2564 GATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCGCGGTCCGCGGCCATCTTGATGAT 2623 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTA 243966 | ||||||||| ||||| || | |||||||| Sbjct 2624 GGTCTTCTGAGAGATCTCCCACACGGTCTTGTA 2656 >seq16166 Length=16622 Score = 138 bits (152), Expect = 2e-27 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| ||| | ||||||||| || ||||||||||| ||||| |||||||||||||| Sbjct 6 CACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGT 65 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| |||| ||||||||||||||||||||||||| ||||| Sbjct 66 GCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGT 125 Query 244825 CCCGGTCTC 244833 || ||||| Sbjct 126 GCCCGTCTC 134 Score = 138 bits (152), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 ||||||| ||||||||||||||||||||||||||| | |||||| || | | || |||| Sbjct 915 ACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGATCGCGAGCCCGCTGC 974 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||||||||| || || |||| ||| | |||||||||| Sbjct 975 TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCCAGGGC 1034 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||| | |||| || ||||||| || Sbjct 1035 TCCAGGTACATGGCGAACGCCCCGGGCCTCT 1065 >seq18171 Length=35654 Score = 116 bits (128), Expect = 7e-21 Identities = 161/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | ||||||||||||||| ||||| |||||||| |||| || | Sbjct 26869 AGGGCCTGCACTGTGACTTTGCCTGCCTCATGTTC---AGCCACCTGCGGCAGCGCCCGT 26813 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || || |||||| || | |||| ||| ||||||| |||||| |||||||||| | Sbjct 26812 CGGAGACGCGGGTGAAGGAGGTGATCATGGACGCCGTGGCCATCGAGCAGGAGTTCCTGA 26753 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC--CACGACCTCATGTGCAAGTACAT 43006 | | |||||||||| |||| |||| |||||| |||| |||||| | ||||| Sbjct 26752 CCGGGGCGCTGCCCGTCAGCCTGATCGGGATGAACTGCACG--CTCATGAAGAGCTACAT 26695 Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 ||||| || ||||||| || ||| || |||| ||||| Sbjct 26694 CCAGTTTGTGGCCGACCGCCTGCTGCTGGAGCTGGGCTTCAGC 26652 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 26087 CCCCTTCGACTTCATGGAGAACATCTCCCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 26028 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 26027 TGTGGGGGAGTACCAG 26012 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 |||||| | |||| || || | || || || || ||||| ||||| || | || ||| Sbjct 27541 GGCGAGCGTGTGGTGGCGTTCGCGGCTGTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCC 27482 Query 42756 TCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| | ||| || ||||| || || |||||||| ||||| || Sbjct 27481 GCCATCTTCTGGCTGAAGAAACGAGGCCTC-ATGCCGGGCCTGACCTTCTCCAACGAGCT 27423 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 27422 CATCAGCCGAGACGAGG 27406 >seq36092 Length=2431 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || ||||||||||| || | || || |||||||||| Sbjct 1270 TGGTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCT 1329 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 || | ||| || ||| ||| |||||| || ||||| ||||| ||||| || |||||||| Sbjct 1330 GGTTGAAGAAG-AGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATCAGCAGA 1388 Query 42825 GACGAGG 42831 || |||| Sbjct 1389 GATGAGG 1395 >seq8880 Length=37550 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || ||||||||||| || | || || |||||||||| Sbjct 866 TGGTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCT 807 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 || | ||| || ||| ||| |||||| || ||||| ||||| ||||| || |||||||| Sbjct 806 GGTTGAAGAAG-AGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATCAGCAGA 748 Query 42825 GACGAGG 42831 || |||| Sbjct 747 GATGAGG 741 >seq1886 Length=180247 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || ||||||||||| || | || || |||||||||| Sbjct 87463 TGGTAGCCTTTGCTGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCT 87404 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 || | ||| || ||| ||| |||||| || ||||| ||||| ||||| || |||||||| Sbjct 87403 GGTTGAAGAAG-AGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGATCAGCAGA 87345 Query 42825 GACGAGG 42831 || |||| Sbjct 87344 GATGAGG 87338 >seq1416 Length=277003 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || |||||| | || || ||||| || |||||||| || |||| || Sbjct 25591 GGAGAGAGAATTGTGGCCTTTGCTGCGGTGGAGGGGATTTTCTTCTCTGGGTCCTTTGCA 25532 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||| | ||| ||| ||| || |||||||||||||||| ||| || || || Sbjct 25531 GCCATCTACTGGTTAAAGAAGAGAGGCCTC-ATGCCCGGACTCACCTACTCCAATGAGCT 25473 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 25472 CATCAGCAGAGATGAGG 25456 >seq3116 Length=119845 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 |||||| | |||| || || | || || || || ||||| ||||| || | || ||| Sbjct 115544 GGCGAGCGTGTGGTGGCGTTCGCGGCTGTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCC 115485 Query 42756 TCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| | ||| || ||||| || || |||||||| ||||| || Sbjct 115484 GCCATCTTCTGGCTGAAGAAACGAGGCCTC-ATGCCGGGCCTGACCTTCTCCAACGAGCT 115426 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 115425 CATCAGCCGAGACGAGG 115409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943404197953840