Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1229 98.7 1e-15 seq937 96.9 4e-15 seq23818 93.3 5e-14 seq770 93.3 5e-14 seq291 93.3 5e-14 seq124 93.3 5e-14 seq20093 89.7 6e-13 seq15201 89.7 6e-13 seq14226 89.7 6e-13 seq890 87.8 2e-12 seq6436 84.2 2e-11 seq1580 84.2 2e-11 >seq1229 Length=416894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 279313 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 279254 Query 57065 TATACTACCGAGGATTGAA 57083 ||||||| |||||| |||| Sbjct 279253 TATACTAACGAGGAGTGAA 279235 >seq937 Length=118861 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 84648 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 84589 Query 57067 TACTACCGAGGATTGAAT 57084 ||||| ||||||||| || Sbjct 84588 TACTAACGAGGATTGCAT 84571 >seq23818 Length=9799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5668 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5609 Query 57067 TACTACCGAGGATTGAATA 57085 ||||| |||||| || ||| Sbjct 5608 TACTAACGAGGAGTGCATA 5590 >seq770 Length=184020 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 158303 AAAAATCTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 158244 Query 57058 TCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTGCAAT 57105 | |||||||||||| |||||| ||| ||| | | | ||||| |||| Sbjct 158243 TGACCACTATACTAACGAGGA--GAAGATACAGCATAAATATGCCAAT 158198 >seq291 Length=438289 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 281877 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 281936 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 281937 TACTAACGAGGAGTGA 281952 >seq124 Length=297192 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 101302 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 101243 Query 57067 TACTACCGAGGATTGAATA 57085 ||||| |||||| || ||| Sbjct 101242 TACTAACGAGGAGTGCATA 101224 >seq20093 Length=17947 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12850 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12791 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 12790 TACTAACGAGGA 12779 >seq15201 Length=36913 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 18079 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 18020 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 18019 TACTAACGAGGA 18008 >seq14226 Length=48749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 23913 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 23854 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 23853 TACTAACGAGGA 23842 >seq890 Length=71331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 21561 AAAGATGCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 21502 Query 57058 TCACCACTATACTACCGAGGA 57078 || ||||||||||| |||||| Sbjct 21501 TCTCCACTATACTAACGAGGA 21481 >seq6436 Length=57996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 44597 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGGCCAC 44538 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 44537 TATACTAACGAGGA 44524 >seq1580 Length=225455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 3267 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 3208 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 3207 TATACTAACGAGGA 3194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 7286 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 7227 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 7226 TATACTAACGAGGA 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542674958216560