Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1284 123 2e-22 seq6073 111 1e-18 seq1185 96.9 3e-14 seq1537 93.3 3e-13 >seq1284 Length=345789 Score = 123 bits (136), Expect = 2e-22 Identities = 114/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 |||||| |||| || || || || || || || || |||||||| || ||||| ||||| Sbjct 258676 AGTTACCAATGCTGTGATCACGGTGCCCGCCTACTTCAATGACTCCCAGCGTCAGGCTAC 258617 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| ||| |||| |||||||| || ||||| ||||| || || || || Sbjct 258616 CAAAGATGCTGGAACTATCTCTGGTCTTAATGTGCTGCGTATCATCAACGAGCCAACAGC 258557 Query 550510 TGCTGCACTTGCATATGGACTTG 550532 ||||||| |||||||||| |||| Sbjct 258556 TGCTGCAATTGCATATGG-CTTG 258535 Score = 102 bits (112), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 549956 TATATTTTGACATA--AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAA 550013 |||||||| | || ||| | |||||||| |||| | || || || | || | Sbjct 259586 TATATTTTTATATTTTAGAAAACATGTCAAAGGGGCCAGCTGTCGGCATCGACCTTGGGA 259527 Query 550014 CCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATC 550073 |||| || |||||| || |||| ||| |||| |||||||| || ||||||||||| | Sbjct 259526 CCACCTACTCTTGTGTAGGAGTTTTCCAACATGGAAAAGTTGAGATCATTGCCAATGACC 259467 Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 | |||||||| || || || ||| || | ||||| || ||||| | || |||| | Sbjct 259466 AGGGTAACAGGACCACCCCCAGTTACGTAGCATTCACTGATACTGAGCGATTGATTGGGG 259407 Query 550134 ATGCAGCAAAATATCAAG 550151 |||||||||| |||||| Sbjct 259406 ATGCAGCAAAGAATCAAG 259389 >seq6073 Length=65956 Score = 111 bits (122), Expect = 1e-18 Identities = 356/547 (65%), Gaps = 8/547 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | |||||||| || || || ||||| | || | || || || Sbjct 26279 ATCGGGATTGATCTGGGAACCACCTACTCCTGCGTGGGTGTGTTTCAGCACGGAAAGGTG 26338 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| || || || |||||||| || || ||||| | ||||| || Sbjct 26339 GAAATCATTGCCAACGACCAGGGCAACAGAACCACCCCCAGCTATGTAGCCTTCACAGAT 26398 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||| ||||| || || | || | ||| || || || | ||| Sbjct 26399 ACCGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCCAACAAC 26455 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || || | ||||| ||||| || | ||| | ||| ||| | Sbjct 26456 ACAGTCTTTGATGCCAAGCGGCTGATTGGCAGAAGGTTCGACGATGCCGTTGTGCAGTCT 26515 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| ||| | || | || | || || || | || ||| | Sbjct 26516 GATATGAAGCATTGGCCCTTCAGGGTGGTCAGTGATGGGGGGAAGCCCAAAGTTCAAGTT 26575 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||||| ||| || | || ||| |||| || |||||||| | || Sbjct 26576 GAATACAAAGGAGAGTCCAAAACGTTCTACCCTGAAGAAATCTCCTCTATGGTGCTGGTG 26635 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 |||||||| | | || || | | || || || | | | ||||| || ||| Sbjct 26636 AAAATGAAGGAGATCGCTGAAGCGTACCTGGGGCAGAAAATCTCAAACGCAGTCATCACT 26695 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT-ATTGC 550470 || ||||| ||||| || ||||| || || || || || || || || || ||| || | Sbjct 26696 GTGCCAGCGTATTTCAACGACTCTCAGCGCCAGGCCACCAAGGACGC-GGGCGTGATCTC 26754 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||| || || || ||||| || || || || || || | || || || || Sbjct 26755 AGGGCTCAATGTGCTGCGGATCATCAACGAGCCCACGGCAGCCGCCATCGCCTACGGCCT 26814 Query 550531 TGATAAA 550537 || ||| Sbjct 26815 GGACAAA 26821 >seq1185 Length=427606 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || |||||||| || || ||||| || || || |||||||| Sbjct 10664 GTTACAAACGCTGTTGTGACGGTACCAGCTTACTTCAATGATTCCCAGCGGCAAGCTACC 10723 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || || || ||| | || || |||||||| || || ||||||||||| |||||| Sbjct 10724 AAGGACGCCGGTACAATTTCAGGTCTAAATGTTCTGCGAATCATCAATGAACCAACTGCT 10783 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| |||||| | || || Sbjct 10784 GCTGCTATTGCTTATGGATTGGACAA 10809 >seq1537 Length=339721 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || |||||||| || || ||||| || || || |||||||| Sbjct 16122 GTTACAAACGCTGTTGTGACGGTACCAGCTTACTTCAATGATTCCCAGCGGCAAGCTACC 16181 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || || || ||| | || || |||||| | || || ||||||||||| |||||| Sbjct 16182 AAGGACGCCGGTACAATTTCAGGTCTAAATGTTTTGCGAATCATCAATGAACCAACTGCT 16241 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| |||||| | || || Sbjct 16242 GCTGCTATTGCTTATGGATTGGACAA 16267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025107070847410