Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6581 104 2e-17 seq1972 104 2e-17 seq7938 91.5 1e-13 >seq6581 Length=52724 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || |||||||| || ||||||| |||||| || | |||||||||||| Sbjct 1155 AGGTCAGTTTCTGGATTGTCACACTCAGGACACAGCACAAATTTTCTGATGAAACCATCC 1214 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || | ||||| || || ||||| ||| | || || || ||| Sbjct 1215 AGCATGTCCTGCAGTTTGTTCGCCTCGTGAGATCCATTGACAATGTAGCGGTCATTCTTG 1274 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || || || |||||||| || || || |||| || || Sbjct 1275 GCATCAAACTGGGTCTGGGCACCCAGCTCACAGCCAAAAAACTTGGTGGG 1324 >seq1972 Length=173698 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || |||||||| || ||||||| |||||| || | |||||||||||| Sbjct 2259 AGGTCAGTTTCTGGATTGTCACACTCAGGACACAGCACAAATTTTCTGATGAAACCATCC 2200 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || | ||||| || || ||||| ||| | || || || ||| Sbjct 2199 AGCATGTCCTGCAGTTTGTTCGCCTCGTGAGATCCATTGACAATGTAGCGGTCATTCTTG 2140 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || || || |||||||| || || || |||| || || Sbjct 2139 GCATCAAACTGGGTCTGGGCACCCAGCTCACAGCCAAAAAACTTGGTGGG 2090 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || |||||||| || ||||||| |||||| || | |||||||||||| Sbjct 7293 AGGTCAGTTTCTGGATTGTCACACTCAGGACACAGCACAAATTTTCTGATGAAACCATCC 7234 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || | ||||| || || ||||| ||| | || || || ||| Sbjct 7233 AGCATGTCCTGCAGTTTGTTCGCCTCGTGAGATCCATTGACAATGTAGCGGTCATTCTTG 7174 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || || || |||||||| || || || |||| || || Sbjct 7173 GCATCAAACTGGGTCTGGGCACCCAGCTCACAGCCAAAAAACTTGGTGGG 7124 >seq7938 Length=58116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || |||||| | Sbjct 33733 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 33792 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| |||||| | ||| || || Sbjct 33793 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 33852 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | |||||| ||||||||||| |||| | | || || | || |||||| Sbjct 33853 CAGAGGCTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCCGACTACAAC 33912 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || || || || || || ||||| ||||| | | || ||||||||| Sbjct 33913 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTTCGTCTCCGAGGGGGA 33960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412443059362037